Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02180 ATGTCTGCAACTATGAGAACAAGTTCATGGGCAGAATCTGCTGATAATGCATCATCTGCACGCCCTGTCAAACCGGCATATGTACCTCCGCATCTTAGGAACCGTTCAGTGACTCCGGCCGAGCCTCCTTCATTTGTGGCTAATGCCAATGAGAGGGGTTTGGGTAATTGGGGTGGTTCCTCTAACTTTAGGCCGGATTTGGGCAATGGTGGTAGGCAAGGATATGGTTCTGGTGGTGGGTTTAACAATAGAGGTGGAGCTGGTATGGGGATGGGGAGGGAGCGTGGGGGAAGACGTGAGGCGAACCCTTTTGAGAATGATATTAATGAATCTTTTAGTGAGCCAGAGAACACAGTGATTAACTTTGATGCTTATGATGATATCCCTGTGGAGACTAGTGGGGAGAATGTTCCCCCTCCTGTGAATACATTTGCGGAAATAGATTTAGGTGATGCGTTGAATCAGAATATACAGAGATGCAAGTATGTGAAACCAACACCTGTTCAGAGGTATGCCATACCGATTTCTCTTGCAGGGAGAGATTTGATGGCTTGTGCTCAGACCGGGTCAGGAAAGACCGCTGCATTTTGCTTTCCTATTATAAGTGGAATCCTTAGGGAGCCGTATGCTCAAAGACCCCGTGTGGCACGGACTGCTTATCCTCTCGCACTTATCCTGTCCCCTACCCGGGAGCTTTCTTGTCAGATACATGATGAGGCCAAAAAGTTTTCCTATCAAACCGGTGTCAAGGTCGTAGTTGCTTATGGAGGAGCCCCGATCACCCAACAGTTGCGGGAGCTTGAGAGAGGAGTTGATATTCTGGTGGCAACTCCAGGACGATTAGTAGATTTGCTTGAGAGGGCTAGGGTGTCATTACAGATGATAAGATATTTGGCTCTTGACGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCCTCCAGGCATGAGACAGACACTGCTGTTTAGTGCAACATTTCCCAAAGAGATACAGAGGCTTGCGTCAGATTTTCTTGCAAGTTATATTTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACCGATCTAATTGCTCAAAGAGTTGAATATGTGCTCGAGTCAGACAAGAGAAGCCACCTCATGGACCTTCTTCATGCTCAAAGAGAAAATGATGTGAATGGCAAGCAAGGTCTGACTTTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCATTGGAACACTGCTTGTGTGTTAACGGATTTCCTGCAACTTGCATTCATGGTGATAGAACACAGCAAGAAAGAGAACAAGCATTGAGGTCGTTCAAGACTGGAAACACTCCAATTCTAGTGGCAACAGATGTTGCAGCACGTGGACTTGATATTCCTCGGGTAGCACATGTGGTAAACTTTGATCTTCCCAATGACATTGATGATTATGTGCACCGGATAGGAAGAACAGGGCGAGCTGGTAAAATGGGACTCGCAACAGCCTTCTTCAATGACAGTAATTTGTCAATGGCCAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGCATGGCTCACCCGTTATGCAGCTAGGACTCCTTATGGTGGCAGAAATAAGCGGACTGGGGGAGCCCGTTTTGGTGGCCGTGATGTTAGGAAGGAGGGCTCATATAATAAAGGAAATGATTACTACGGTGGAGCTGGTGGTGGTTATGGAGTTCCTGCGAGTTATGGTGGAGGGTATGGTCAAGGTGTAACAAGTGCTTGGGATTAG 1791 0.4662 MSATMRTSSWAESADNASSARPVKPAYVPPHLRNRSVTPAEPPSFVANANERGLGNWGGSSNFRPDLGNGGRQGYGSGGGFNNRGGAGMGMGRERGGRREANPFENDINESFSEPENTVINFDAYDDIPVETSGENVPPPVNTFAEIDLGDALNQNIQRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILREPYAQRPRVARTAYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLASYIFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENDVNGKQGLTLVFVETKKGADALEHCLCVNGFPATCIHGDRTQQEREQALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDSNLSMAKPLADLMQEANQEVPAWLTRYAARTPYGGRNKRTGGARFGGRDVRKEGSYNKGNDYYGGAGGGYGVPASYGGGYGQGVTSAWD 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02180 596 MobiDBLite consensus disorder prediction 1 42 - -
Trre2g02180 596 FunFam Probable ATP-dependent RNA helicase DDX4 105 359 - -
Trre2g02180 596 SMART ultradead3 161 372 IPR014001 -
Trre2g02180 596 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 173 357 IPR014001 -
Trre2g02180 596 Pfam DEAD/DEAH box helicase 166 346 IPR011545 GO:0003676|GO:0005524
Trre2g02180 596 Pfam Helicase conserved C-terminal domain 381 496 IPR001650 -
Trre2g02180 596 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 142 170 IPR014014 GO:0003724
Trre2g02180 596 Gene3D - 360 538 IPR027417 -
Trre2g02180 596 SMART helicmild6 415 496 IPR001650 -
Trre2g02180 596 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 384 535 IPR001650 -
Trre2g02180 596 FunFam ATP-dependent RNA helicase RhlB 360 538 - -
Trre2g02180 596 MobiDBLite consensus disorder prediction 69 111 - -
Trre2g02180 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 513 IPR027417 -
Trre2g02180 596 MobiDBLite consensus disorder prediction 1 16 - -
Trre2g02180 596 Gene3D - 100 359 IPR027417 -
Trre2g02180 596 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 112 535 - -
Trre2g02180 596 CDD SF2_C_DEAD 369 505 - -
Trre2g02180 596 CDD DEADc_DDX3_DDX4 143 363 IPR044763 GO:0003724|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02180 Trre-Chr2 17806404 17811158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02180 140 528 Eukaryotic Initiation Factors Gene Family AT3G19760 29.923 1.53e-58 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02180 K11594 - gmx:100818326 913.679