Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g02160 | ATGGATCTAGGAGGCGCTGGTAGTTCCTTCAAAGAAGTTCTTGAGTCTCGCCTGATATTTTCAGATTTTGAGACATCTAAGTATAAATTTGAGGCCAATTGTAATAGTACATTTGCAAAATCAAGGACTTGTGTGGATGGAAAGAATGGAAATCATTCAAAGAATGGTGTGTATGACCTACTCGAGTGCCCTGTTTGCAAGAATTTAATGTATCCCCCAATTCATCAGTGCCCAAATGGCCACACATTATGTTCAAACTGTAAGATTGTAGTGCATAATCGTTGCCCAACATGTCATCGTGATCTTGGGAATATAAGGTGTTTGGCTTTAGAGAAAGTGGCAGAATCAATGGAGCTTCCTTGCAGATATCAAAATCTAGGTTGTCATGATATATTCCCATACCACACGAAGCTAAAACATGAGCAAAATTGTCGATTTCGTCCATACAATTGCCCTTATGCTGGATCAGAGTGCTCTATAATGTGTGACATTCCAACACTTATGACCCATCTCAAGGAGGATCACAAGGTTGACGTACATGATGGATTCACCTTTAACCATCGATATGTCAAATCAAATCCACATGAAGTTGAAAATGCCACATGGATGTTAACCGTTTTCAATTGTTTTGGAAAGCATTTCTGCTTGCACTTCGAGGCATTTCTACTAGGCACAAATCCAGTTTATATGGCGTTTTTACGATTTTTGGGAGATGAGAAAGAGGCAAAGAAATTCAGGTATAGCTTAGAGGTTGGTGCAAATAGTCGCAAACTAATATGGCAAGGAATTCCAAGGAGTATCCGTGAGAGTCATAGAAAAGTTCGAGACTGTCAAGATGGACTCATCATTCAGAGAAACCTAGCACTTTATTTTTCAAGTAGTGATAAACAACAATTAAAGTTGAGGGTCACCGGTCGTATATGGAAAGAAGAATGA | 936 | 0.391 | MDLGGAGSSFKEVLESRLIFSDFETSKYKFEANCNSTFAKSRTCVDGKNGNHSKNGVYDLLECPVCKNLMYPPIHQCPNGHTLCSNCKIVVHNRCPTCHRDLGNIRCLALEKVAESMELPCRYQNLGCHDIFPYHTKLKHEQNCRFRPYNCPYAGSECSIMCDIPTLMTHLKEDHKVDVHDGFTFNHRYVKSNPHEVENATWMLTVFNCFGKHFCLHFEAFLLGTNPVYMAFLRFLGDEKEAKKFRYSLEVGANSRKLIWQGIPRSIRESHRKVRDCQDGLIIQRNLALYFSSSDKQQLKLRVTGRIWKEE | 311 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g02160 | 311 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 54 | 310 | - | - | |
Trre2g02160 | 311 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 113 | 171 | - | - | |
Trre2g02160 | 311 | SUPERFAMILY | TRAF domain-like | 119 | 308 | - | - | |
Trre2g02160 | 311 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 172 | 304 | - | - | |
Trre2g02160 | 311 | ProSiteProfiles | Zinc finger SIAH-type profile. | 116 | 176 | IPR013010 | GO:0008270 | |
Trre2g02160 | 311 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 48 | 106 | IPR013083 | - | |
Trre2g02160 | 311 | SUPERFAMILY | RING/U-box | 57 | 103 | - | - | |
Trre2g02160 | 311 | ProSiteProfiles | Zinc finger RING-type profile. | 63 | 99 | IPR001841 | - | |
Trre2g02160 | 311 | Pfam | Seven in absentia protein family | 105 | 304 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Trre2g02160 | 311 | CDD | RING-HC_SIAHs | 61 | 99 | - | - | |
Trre2g02160 | 311 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 168 | IPR013083 | - | |
Trre2g02160 | 311 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 169 | 304 | IPR008974 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g02160 | Trre-Chr2 | 17611126 | 17613586 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g02160 | 3 | 311 | C3H Transcription Factor Family | AT2G41980 | 76.052 | 7.81e-177 | 489 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g02160 | K04506 | - | gmx:100813966 | 529.635 |