Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02158 ATGGATTCTCAAAAACCAAACTCCAACCCAGCTTTCCCTTCAGCACCACCTGGTTTTAGAACTCTAACATTAGATCTGAATCAAGAGCCTTGTGATGAAACACCTCAAACAAACCTAAACCATCAAGAACAAATGCTAACAAACAACAAAACCACCAATAATATGTACTCTGATTTGCACCACAATGCTGAGATTTTTCGAAGCAATTTCAGCTTTCAACGAATCCAAAACGAAGTCATCGGTGATCCAAATTCACGTGCTATCGTTATGATTCCTGACTTGCTGAAAAATGACAACACCACCAGCAACGCTCCGGCGGGTGAAGTCACGGTACCAAGACTTCAACCACACTTTAAGGAGCTGGTTCGTGTTTCGGATCTCGATTTACCGGATCAGCAACAATTACGTGCAATTGTAAGGAAAATAAGAATGTTATATAATTCTGTTCGTCTTTTGGCTGTGGCAGAAGAAGAGAAACAGATTGTAGTTCATGCTGAAAGAAGCGATCAAAGAGCTTATGCTGTGATGAGGAGGCATGGTTTGTGTTTGAATCAAGATAAAAAACTTATTGGCACAATTCCCGGTATTTATATCGGGGATACTTTTGTGTATAGAACGGAATTAGCTGTTGTTGGTTTGCATGGTCAACAAGAAGCTGAGATTGATTATTATTATTATTTACCTGGTAGCATGAGTTCGAATAACGAACTGATTGCTACTAGTGTGATTGTTCCTGGTGGATATGAAAATTGCGTTGATCAAGGTGATTTTATTATTTATTCTTGTCATGGTGGTGACGATAAGGATTCGAGGCAGATTTTTCATCAGAACCTTGCTATGGGGAGAAGTATGCATTATGGGATTGAAGTTAGGGTTATTCCTTGTGTACAATATGAAGGTACTTCTTCTTCTATGTTTAATAAGGTTTATTTTTATGATGGTTTGTATAAGGTAGTTAAATATTGGATTGATGGTAAATCTGGTTCTGATGTCCACAAGTTTATGCTATGGAGAATCGATAATCAAGCTAAGATTGATTGTCTTGTTTATAATCCTAGGTGTGTCTTATCTCCCGATATTTCGAACCAGAATGAGAAAGTTGGTATTAGGCTAGTTAATAATATTGATAGGAATGATGACCCGATATTTTTTGAGTATCTTCCGAGTACTAGTTTTTCGTCGTTAGTGTTTCATCAGAGCAGTAGGGAAGAAATAGGTTGTGAATGTATTGACGGTTGTGTGGACGGATGCTTCTGTTTCATAAAGAATGGAAATGAATTTCCATATAGTCAAAATGGGATTCTCTTGAAAGGAAGACCGTTAATTTTTGAATGTGGCCCTTTTTGCCGTTGTCCACCTCATTGTCGTAACCGTGTTACGCAAAAAGGTCTTAAACACAGGTTGGAAGTGTTTAGATCTAGGGACTATGGTTGGGGAGTTAGGTCTTTGGACTTTATTGAAGCAGGAACTTTCATATGTGAGTACACCGGGGTTGCTTTGACTAAGGAGCAAGAAAAAATTGTTACCATGAATGGTGATGAATTGATATATCCAAGTTGGTTTGCAGAAAGTTGGGCAGAATGGGGTAATTTATCCTTGATAGACACTAGTTATAAATGTCCATCCATCAATCAATCAATTCCTCCTTTTGAGTTTGCTCTTGATGTGTCAAGAATGAGGAACGTTGCATGCTATATGAGCCATAGTTCAACTCCTAATGTCATGGTTCAATTTGTTCATTTTGATCACAATAATCTCATGTTGCCTCACTCTATGCTATTTGCAATGGAGAACATCCCTCCATCCAGAGAGTTTAGCCTTGATTATGGAGTAGTTTATGGTGACTTGAGTGGCTAA 1857 0.3818 MDSQKPNSNPAFPSAPPGFRTLTLDLNQEPCDETPQTNLNHQEQMLTNNKTTNNMYSDLHHNAEIFRSNFSFQRIQNEVIGDPNSRAIVMIPDLLKNDNTTSNAPAGEVTVPRLQPHFKELVRVSDLDLPDQQQLRAIVRKIRMLYNSVRLLAVAEEEKQIVVHAERSDQRAYAVMRRHGLCLNQDKKLIGTIPGIYIGDTFVYRTELAVVGLHGQQEAEIDYYYYLPGSMSSNNELIATSVIVPGGYENCVDQGDFIIYSCHGGDDKDSRQIFHQNLAMGRSMHYGIEVRVIPCVQYEGTSSSMFNKVYFYDGLYKVVKYWIDGKSGSDVHKFMLWRIDNQAKIDCLVYNPRCVLSPDISNQNEKVGIRLVNNIDRNDDPIFFEYLPSTSFSSLVFHQSSREEIGCECIDGCVDGCFCFIKNGNEFPYSQNGILLKGRPLIFECGPFCRCPPHCRNRVTQKGLKHRLEVFRSRDYGWGVRSLDFIEAGTFICEYTGVALTKEQEKIVTMNGDELIYPSWFAESWAEWGNLSLIDTSYKCPSINQSIPPFEFALDVSRMRNVACYMSHSSTPNVMVQFVHFDHNNLMLPHSMLFAMENIPPSREFSLDYGVVYGDLSG 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02158 618 SUPERFAMILY PUA domain-like 176 351 IPR015947 -
Trre2g02158 618 Gene3D - 172 350 IPR036987 -
Trre2g02158 618 MobiDBLite consensus disorder prediction 1 20 - -
Trre2g02158 618 ProSiteProfiles SET domain profile. 466 610 IPR001214 GO:0005515
Trre2g02158 618 Pfam SET domain 477 610 IPR001214 GO:0005515
Trre2g02158 618 ProSiteProfiles YDG domain profile. 191 338 IPR003105 -
Trre2g02158 618 SMART set_7 466 616 IPR001214 GO:0005515
Trre2g02158 618 SUPERFAMILY SET domain 349 614 IPR046341 -
Trre2g02158 618 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 54 610 - -
Trre2g02158 618 Gene3D SET domain 351 617 IPR046341 -
Trre2g02158 618 SMART preset_2 357 450 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre2g02158 618 Pfam Pre-SET motif 360 458 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre2g02158 618 SMART G9a_1 186 342 IPR003105 -
Trre2g02158 618 Pfam SAD/SRA domain 190 342 IPR003105 -
Trre2g02158 618 ProSiteProfiles Pre-SET domain profile. 405 463 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02158 Trre-Chr2 17591156 17593012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02158 98 611 Su(var)3-9 homologs AT5G04940 33.394 2.99e-80 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre2g02158 SAD_SRA 2.6e-31 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02158 K11420 - tpra:123885822 839.721