Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02152 ATGGAGCTTGCTTTGAGCTTAGGTGACACACCAAAATTACCCTTTTCTTTTCTTGACAAACCCACTAAAGATCCATTACCAAATTTGTTCTTAACACAACAAGGAAAAACCTTAGACCTTGAAAAAACAGGTTCTTTAGATCCACCTATTCAACTTGACCTTCTTCCTTTCTCTCCTGTTCTTAGATCTCACCACTCTTCTTCTCACCTTCCCATTCCTTGGCTCACTCAACCATGTGGACCGGTGAGGGAGTTAGATGTGAACCGTTTTCCGGCGATGACGGAGGAGGCCGACGACGGCGCTTCACTGTCATCCCCCAGCAGTTCTGTGTCTCCATTTCCAATGGATTTCAGTATGAGGAACAACAATGCTGAATATGGAGGAAGAAACAAGAGAGAAAATGAAGGTGAAGCTGAAAGAGTGAGTGATGATGATGAAAACGGTTCAACTCGGAAGAAACTCAGACTTTCTAAAGATCAATCTGCTTTTCTTGAAGAAAGCTTCAAAGAACACACCACTTTAAATCCAAAGCAAAAACTTGCACTGGCAAAACAGTTGAATCTAAGTCCTCGTCAGGTGGAAGTTTGGTTTCAAAACAGAAGAGCAAGGACAAAGTTAAAGCAAACAGAAGTGGATTGTGAGTATCTAAAGAGATGTTGTGAGACATTAACAGAAGAGAATAGAAGGTTACAAAAGGAACTTCAAGAACTTAGAGCTTTGAAAACTAATCAACCATTTTACATGCAACTACCAGCTACCACTTTAACTATGTGTCCTTCTTGTGAACGTGTGGCTACAAACCCTAGCAACAATCAAACCAATAACAACAAGGCTAGAACATTGCATTTCTCTAATGCTCAACAAGCCCAACAACAAAAGGCCCAAGCCCATCAGATTCCTTCATGA 906 0.4106 MELALSLGDTPKLPFSFLDKPTKDPLPNLFLTQQGKTLDLEKTGSLDPPIQLDLLPFSPVLRSHHSSSHLPIPWLTQPCGPVRELDVNRFPAMTEEADDGASLSSPSSSVSPFPMDFSMRNNNAEYGGRNKRENEGEAERVSDDDENGSTRKKLRLSKDQSAFLEESFKEHTTLNPKQKLALAKQLNLSPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTNQPFYMQLPATTLTMCPSCERVATNPSNNQTNNNKARTLHFSNAQQAQQQKAQAHQIPS 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02152 301 MobiDBLite consensus disorder prediction 100 118 - -
Trre2g02152 301 MobiDBLite consensus disorder prediction 96 156 - -
Trre2g02152 301 Gene3D - 155 205 - -
Trre2g02152 301 MobiDBLite consensus disorder prediction 282 301 - -
Trre2g02152 301 FunFam Homeobox-leucine zipper protein 18 137 212 - -
Trre2g02152 301 Pfam Homeobox associated leucine zipper 207 241 IPR003106 GO:0006355|GO:0043565
Trre2g02152 301 SUPERFAMILY Homeodomain-like 144 208 IPR009057 -
Trre2g02152 301 SMART halz 207 250 IPR003106 GO:0006355|GO:0043565
Trre2g02152 301 MobiDBLite consensus disorder prediction 126 156 - -
Trre2g02152 301 SMART HOX_1 149 211 IPR001356 GO:0003677
Trre2g02152 301 Pfam Homeodomain 151 205 IPR001356 GO:0003677
Trre2g02152 301 ProSiteProfiles 'Homeobox' domain profile. 147 207 IPR001356 GO:0003677
Trre2g02152 301 ProSitePatterns 'Homeobox' domain signature. 182 205 IPR017970 GO:0000981|GO:0006355
Trre2g02152 301 Coils Coil 213 243 - -
Trre2g02152 301 CDD homeodomain 151 208 IPR001356 GO:0003677
Trre2g02152 301 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 48 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02152 Trre-Chr2 17536246 17538419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02152 49 277 Homeobox Transcription Factor Family AT5G47370 53.942 6.14e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre2g02152 Homeodomain 4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02152 K09338 - gmx:100776113 355.91