Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02151 ATGGGGGAACAATCATCTGGTCGAATTTCAATGGAAATTGATATGAATCAGGAACCATATCCAGATCAATTATCAGTTGCTATTGCTAATATTGGTGCTTTGAATTTGAATGATTCAATTCCTCAACCTTTTAATAGATTTGGTAGTAATCTTTACAATCCTGATACATGGGAGCATGTTTTGATTTATCCTCGCAATCGCGGTGAAAAGCCCGAAGCTGCATTGAAGAAGAGTAATGATGGAAGTGTTTATGATTGTAATATTTGTTTAGATTTGGCTAAGGAACCTGTTGTTACTTGTTGTGGTCATTTGTTTTGTTGGCCATGTTTATATAGATGGTTGAATTTAAGATCTTCGCGAACTCGAACGAAAGAATGTCCTGTTTGCAAGGGTGAAGTTACTGATCAGGATGTTATTCCTATATATGGTGTTGGGAATGATGATGAGGTTCGTAATGAGGGTTCTAGCTCCGCAACGCCTCAAATCCCTCGAAGACCTAATGCAAAGCGTGTCTCGAGGGATCCTAATGTGATGCAAATGAGGGATCCTAATGTGATGCAAATGAGGGATCGAATTCTAGATAGAGGCGCTTCATTTTCAGCTTTATTTAATTTGTCAGAGAGATGA 627 0.3844 MGEQSSGRISMEIDMNQEPYPDQLSVAIANIGALNLNDSIPQPFNRFGSNLYNPDTWEHVLIYPRNRGEKPEAALKKSNDGSVYDCNICLDLAKEPVVTCCGHLFCWPCLYRWLNLRSSRTRTKECPVCKGEVTDQDVIPIYGVGNDDEVRNEGSSSATPQIPRRPNAKRVSRDPNVMQMRDPNVMQMRDRILDRGASFSALFNLSER 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02151 208 SMART ring_2 86 129 IPR001841 -
Trre2g02151 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 173 IPR013083 -
Trre2g02151 208 MobiDBLite consensus disorder prediction 144 176 - -
Trre2g02151 208 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 74 182 IPR045103 GO:0005783|GO:0006511|GO:0061630
Trre2g02151 208 SUPERFAMILY RING/U-box 85 136 - -
Trre2g02151 208 ProSiteProfiles Zinc finger RING-type profile. 86 130 IPR001841 -
Trre2g02151 208 CDD RING-HC_RNF5-like 84 130 - -
Trre2g02151 208 ProSitePatterns Zinc finger RING-type signature. 101 110 IPR017907 -
Trre2g02151 208 Pfam RING-type zinc-finger 86 127 IPR027370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02151 Trre-Chr2 17523690 17524316 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02151 69 192 C3H Transcription Factor Family AT3G58030 48.387 1.38e-35 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02151 K10666 - tpra:123922773 263.462