Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g02150 | ATGGGAGAACACGAATCTGGTCCAGTTCCAATGGACATTGATGTAATCCTCAATGATGCTGTTCATCGTAATGGTGGTACTGTTAGTAATCTTTTTAATCATCATATTTGGGAAAACGTGGTAAGAGTTGCTGAAGTGCCACAAATTAACAATGTTAGTGTTGCTGCATTGGATAAGAGCGAGAAATCAGAGAAAAAGGATGATAATGCTGAAAATGATGGAGGTTTCTTTGATTGTAATATTTGTTTAGATTTGGCTAAAGATCCTGTTGTTACTTGTTGTGGTCATTTGTTTTGTTGGCCATGCATATATAGATGGTTGTATTTAAGTTCTTCTCGAACTCAAACTAAAGAATGTCCGGTTTGTAAGGGAGAAGTTACTGATAAGGATGTTCTTCCTATATATGGTAGTGGGAATAATGACGAGGTTCGTAATCGTGATGAAGGTTCAAGCTCTGGCGCTCGTCAAATCCCTCGCAGACCTAATGCAAGGCGTGTCTGGAGGGATCCTAATGCAAGGCGTGAATTGAGGGATCATAATGCAAGGCCTTACTCGAGGGATACTAATGCAAGGCCTGTCTCGAGGGATACTAATGCAAGGCCTGTCTCGAGGGATCCTTTTGCAACCCGTGTCTCAAGGGATTCTAATGGAAGGTCTGTCACGAGGGATTATAATGCAAGGCCTGTCTCGAGGGATACTAATGCAAGTCGTGTCTCGAGGGATTCTAATGTGAGCCAAATAATACAGTGGAGAGTAGAAATGAGGATTCAATAG | 774 | 0.4173 | MGEHESGPVPMDIDVILNDAVHRNGGTVSNLFNHHIWENVVRVAEVPQINNVSVAALDKSEKSEKKDDNAENDGGFFDCNICLDLAKDPVVTCCGHLFCWPCIYRWLYLSSSRTQTKECPVCKGEVTDKDVLPIYGSGNNDEVRNRDEGSSSGARQIPRRPNARRVWRDPNARRELRDHNARPYSRDTNARPVSRDTNARPVSRDPFATRVSRDSNGRSVTRDYNARPVSRDTNASRVSRDSNVSQIIQWRVEMRIQ | 257 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g02150 | 257 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 56 | 198 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Trre2g02150 | 257 | ProSiteProfiles | Zinc finger RING-type profile. | 79 | 123 | IPR001841 | - | |
Trre2g02150 | 257 | MobiDBLite | consensus disorder prediction | 133 | 242 | - | - | |
Trre2g02150 | 257 | MobiDBLite | consensus disorder prediction | 209 | 242 | - | - | |
Trre2g02150 | 257 | CDD | RING-HC_AtRMA-like | 77 | 123 | - | - | |
Trre2g02150 | 257 | SMART | ring_2 | 79 | 122 | IPR001841 | - | |
Trre2g02150 | 257 | ProSitePatterns | Zinc finger RING-type signature. | 94 | 103 | IPR017907 | - | |
Trre2g02150 | 257 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 38 | 145 | IPR013083 | - | |
Trre2g02150 | 257 | MobiDBLite | consensus disorder prediction | 162 | 185 | - | - | |
Trre2g02150 | 257 | Pfam | RING-type zinc-finger | 79 | 120 | IPR027370 | - | |
Trre2g02150 | 257 | SUPERFAMILY | RING/U-box | 78 | 129 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g02150 | Trre-Chr2 | 17520104 | 17520877 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g02150 | 55 | 166 | C3H Transcription Factor Family | AT3G58030 | 54.464 | 1.83e-36 | 132 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g02150 | K10666 | - | tpra:123922773 | 204.527 |