Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02150 ATGGGAGAACACGAATCTGGTCCAGTTCCAATGGACATTGATGTAATCCTCAATGATGCTGTTCATCGTAATGGTGGTACTGTTAGTAATCTTTTTAATCATCATATTTGGGAAAACGTGGTAAGAGTTGCTGAAGTGCCACAAATTAACAATGTTAGTGTTGCTGCATTGGATAAGAGCGAGAAATCAGAGAAAAAGGATGATAATGCTGAAAATGATGGAGGTTTCTTTGATTGTAATATTTGTTTAGATTTGGCTAAAGATCCTGTTGTTACTTGTTGTGGTCATTTGTTTTGTTGGCCATGCATATATAGATGGTTGTATTTAAGTTCTTCTCGAACTCAAACTAAAGAATGTCCGGTTTGTAAGGGAGAAGTTACTGATAAGGATGTTCTTCCTATATATGGTAGTGGGAATAATGACGAGGTTCGTAATCGTGATGAAGGTTCAAGCTCTGGCGCTCGTCAAATCCCTCGCAGACCTAATGCAAGGCGTGTCTGGAGGGATCCTAATGCAAGGCGTGAATTGAGGGATCATAATGCAAGGCCTTACTCGAGGGATACTAATGCAAGGCCTGTCTCGAGGGATACTAATGCAAGGCCTGTCTCGAGGGATCCTTTTGCAACCCGTGTCTCAAGGGATTCTAATGGAAGGTCTGTCACGAGGGATTATAATGCAAGGCCTGTCTCGAGGGATACTAATGCAAGTCGTGTCTCGAGGGATTCTAATGTGAGCCAAATAATACAGTGGAGAGTAGAAATGAGGATTCAATAG 774 0.4173 MGEHESGPVPMDIDVILNDAVHRNGGTVSNLFNHHIWENVVRVAEVPQINNVSVAALDKSEKSEKKDDNAENDGGFFDCNICLDLAKDPVVTCCGHLFCWPCIYRWLYLSSSRTQTKECPVCKGEVTDKDVLPIYGSGNNDEVRNRDEGSSSGARQIPRRPNARRVWRDPNARRELRDHNARPYSRDTNARPVSRDTNARPVSRDPFATRVSRDSNGRSVTRDYNARPVSRDTNASRVSRDSNVSQIIQWRVEMRIQ 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02150 257 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 56 198 IPR045103 GO:0005783|GO:0006511|GO:0061630
Trre2g02150 257 ProSiteProfiles Zinc finger RING-type profile. 79 123 IPR001841 -
Trre2g02150 257 MobiDBLite consensus disorder prediction 133 242 - -
Trre2g02150 257 MobiDBLite consensus disorder prediction 209 242 - -
Trre2g02150 257 CDD RING-HC_AtRMA-like 77 123 - -
Trre2g02150 257 SMART ring_2 79 122 IPR001841 -
Trre2g02150 257 ProSitePatterns Zinc finger RING-type signature. 94 103 IPR017907 -
Trre2g02150 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 145 IPR013083 -
Trre2g02150 257 MobiDBLite consensus disorder prediction 162 185 - -
Trre2g02150 257 Pfam RING-type zinc-finger 79 120 IPR027370 -
Trre2g02150 257 SUPERFAMILY RING/U-box 78 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02150 Trre-Chr2 17520104 17520877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02150 55 166 C3H Transcription Factor Family AT3G58030 54.464 1.83e-36 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02150 K10666 - tpra:123922773 204.527