Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02148 ATGGTTCTAATTGATGAAAAGGGTGGAAAGATTCATGCTTCTATTAGAAAGCAGTTGATGTATATGTATGAATCCAAGCTCAAGGAGGGGCAGGGTGCTGGTATATCTGATTTTGGTCTAACCTTCACTAACATTGATGAAATATGTGCTCATACTCATGATTATGAGTACCTGGTTGATGTTATTGGTGTTTTGACTGGTATGTCTGCTGAGAGAGAGTATGTTAGGGATGGCAAGATAACTAAGATGATCATTGTTGAGCTTACTGATCATAGCGATAAGTGTGAATGTGCTTTGTTTGGTGATTACGTCGATGAGTTTAATAAGAAGATTGGGAAATCTGTTGTTGGGTTGCCAATTGTTGTCATTCAGTATGCCAAGATTAAAATTTTTAGAGACAAGGTATCCATCCAGAATGTGATTCACACTACCAGGATTTTTGTTAACCCAGATATCCCTGAGGCCGAAACTTTCAAGAATAGCATTGTTGTGCATGGTATTGAGTTGGATTCTGCTGTTCCATTGATTGGGGAGTCTGCTAAGCCTACACCCGATGAGGAGTTCCTTAGAATGCATCCGAAAAAAACACTGGATGAATTGGTTATTCCCAGGTTTAGGGTGAGGCTTGAGGTATCTGATGGGAAATCTACTCTGGTGTTTGTTTTGTTTGATTCTGACATGAGTTATATCATGGAGAAGTCATGTTCCTTTTTTGTTGTGCAATCTAAGACATTGTCCAATCCTATAGACTTGGGTTCTGGTACAGATACTTGTGGGAGTGATGCTGGTGATGATGATCTTCAGTCTTCACATGTCTACACTCTTGTGACCCCAAGAAGTACTCCGATCGTTTTGAACAAGCCTACTACGAACAGGGAACAAGTGAGATGTGTTTGTCTTGGTCTGTTGGAACAAGGTTGTTCATGGTATTGCAACAAAGGATATATTGTTGAACATGTATTTGACACAGGACTTCAGTTTGAGAATTCTTGTGAAATTGGTGTTTTCTCAAAACTTACCAATGCCTATCGTTTAGTTGCAATTGGTGGTTCTGAAAATATCTACAGATACAAGGGAAATTTTCCTGAAACTCTTAAAGTCAAAGGCATCTTGGCTGATTTCAGTAATTTTGAAATAGATTTGAAGATACAAAAGGATAAAGGCATACCTGTACAAAGGTGTTGCACTTTGAAGCTTGCTGGGATGGATTATTGTGGCACTACAAGGTAG 1230 0.3902 MVLIDEKGGKIHASIRKQLMYMYESKLKEGQGAGISDFGLTFTNIDEICAHTHDYEYLVDVIGVLTGMSAEREYVRDGKITKMIIVELTDHSDKCECALFGDYVDEFNKKIGKSVVGLPIVVIQYAKIKIFRDKVSIQNVIHTTRIFVNPDIPEAETFKNSIVVHGIELDSAVPLIGESAKPTPDEEFLRMHPKKTLDELVIPRFRVRLEVSDGKSTLVFVLFDSDMSYIMEKSCSFFVVQSKTLSNPIDLGSGTDTCGSDAGDDDLQSSHVYTLVTPRSTPIVLNKPTTNREQVRCVCLGLLEQGCSWYCNKGYIVEHVFDTGLQFENSCEIGVFSKLTNAYRLVAIGGSENIYRYKGNFPETLKVKGILADFSNFEIDLKIQKDKGIPVQRCCTLKLAGMDYCGTTR 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02148 409 CDD RPA1_DBD_B_like 60 159 - -
Trre2g02148 409 Gene3D - 322 399 - -
Trre2g02148 409 Gene3D - 35 167 IPR012340 -
Trre2g02148 409 SUPERFAMILY Nucleic acid-binding proteins 40 166 IPR012340 -
Trre2g02148 409 Pfam Domain of unknown function DUF223 1 56 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02148 Trre-Chr2 17502273 17515106 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02148 323 355 Eukaryotic Initiation Factors Gene Family AT3G55620 84.848 4.39e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02148 - - tpra:123904946 318.931