Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02120 ATGGCGTCTAAAGGTCCAAGGTCTAAGGTTGATCATGAGTATAAAGCTAAACGGCAAAAGGCTGTTGAAGCTCCACGGGAGCCTAGACGACCCAAAACTCATTGGGACCATGTCTTAGAAGAGATGGTGTGGTTATCAAAGGACTTTGAGTCGGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTTTCTTTAAAAGCCAGCAAAGGCATGTTAGATCAGGCTACAAGAGGTGAAAAGAAGATGAAGGAAGAAGAGCAGCGGTTAAGAAAAGTTGCACTAAATATTTCCAAGGATGTTAAAAAATTTTGGACAAAAATAGAAAAACTGGTTCTTTACAAGCATCAAATGGAACTCGATGAGAAGAAGAAAAAGGCACTGGACAAACAGCTTGAGTTTCTTTTAGGTCAAACTGAGAGATACTCAACTATGTTGGCCGAGAATCTTGTGGATGCTCATACACCAGCAGAGAAAATTTCTGCAGAGCATCATATGAGTATTCAATGCAAAGATATAGACGGAGACATTATCAATGAACCTAAGGAAGCCAATGTTGCAGAGTATCAATCCGATGCACCTGATCAGGATGAAGAATATGATATACAATCTGATGATGTATCGGATGATGACGAGCAAACCCTCGAGGAAGATGAGGCTCTTATAACTAAAGAAGAAAGGCAAGAGGAATTGGCAGCTTTGCAAAATGAAATGGATCTTCCAATTGAGGAGTTACTCAAACGTTATGCTGGAGATAAAGGAGAATTGGCAAAGCATGAAAGTAGTCCGGAGTGTAGTGAAGATGGTGGAAAAATAGTTAGAACCGGTGATGCTGTTGATCAGGAAGAACTATTATCAGAAAATGGAGATCTATCTATCACAAAAATAGGTACAAACGACTCCAGCATGATCCCTGGTCGACGTTGTGATGACAGTAATGGTGATGCATCTACACCAACAAACGATCTATCTCAAAATGATGATCATCAATCTGAAAATCTTGAAGAGGTTCCCAGTGAGACTGCCAAAGAAAATGCCCCATTTGATTTTTCTGATGAAGAGGAAGATGGTGACTTTTTGTCTGGCACGGAGGATAAGGATGACGAAACAACCTTATCTGAGGAAGAAAAACTGGACAGAGTTGATGCAATTGATCCAAAGGATGAGATTGCATTACTACAAAAAGAGAGTGACATGCCAGTTGAGGAACTGCTTGCAAGGTATAAAAAGGACCTGAGTGATGATGGGGATCAGGAAGATGAGTCATATTATGCTTCTGCTTCATCAGAAGATCATCAGAACTCACCAGTCCATGATGATGCTGAGCAGAAGGATCCAGCTGTTTCTATGGATGTAGATATGAAATCCAGTGAGCAACTAGCTACCATACAAACTCAGGCAGAAGAACAGGGGCAAGCACCTTGTGAAAATTCAGAGGAAAGAGAAAGTGAGGATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCAACCGGAAACACCTTCTCCACAACTAAAGTGCGTACAAAATCCCCCTTTCTACTCAAGTACACTCTTCGTGAATATCAACATATTGGATTGGATTGGCTCGTAACAATGTATGAAAAAAAGCTGAATGGAATTTTGGCAGATGAAATGGGGCTTGGAAAAACTATTATGACTATAGCATTGCTTGCACATCTTGCCTGTGAAAAGGGAATCTGGGGTCCACATCTAATTGTGGTGCCAACTAGTGTGATGCTTAACTGGGAGACTGAATTTCTAAAATGGTGTCCCGCATTTAAAATTTTGACCTATTTCGGAAGCGCAAAGGAGCGAAAACATAAAAGACAAGGATGGTTAAAACCAAACTCATTTCATGTATGCATAACAACTTATAGATTAGTTATTCAGGATTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCCCACCTCATTAAAAACTGGAAATCACAACGGTGGCAGACATTGTTGAATTTCAATGCAAAACGACGGATTCTGTTGACTGGTACACCGCTACAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTGATGCCCCACGTTTTCCAGTCACACCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGAGAGGAAAAAGTTAATAAAGAGGTTGTTGATCGTCTGCATAATGTCCTTCGTCCGTTCTTACTCCGTCGATTAAAGAGAGATGTAGAAAAGCAACTTCCCATGAAAGTTGAGCATGTCATATTCTGTAGGCTGTCAAAGAGGCAGAGAAATTTGTACGAGGATTTTATTGCTAGCTCAGAGACTCAAGCTACTCTTGCAAACGCCAATTTTTTTGGAATGATTGGTGTTATCATGCAACTTCGCAAGGTTTGTAATCATCCTGACCTATTTGAGGGCCGTCCAATCGTCAGTTCTTTTGATATGTGTCCGATTGATATTCAGTTAAGTTCTTCTATTTGCTCCATGCTTTTGCCTAGTACCTTTTCAACGGTTGACTTAGAAGGTTTGGGTCTTTTATTTACTCATCTTGATTATGGCATGACTTCATGGGAGAGTGATGAAGTGCAAGCCATTGAGACCCCTGCTACTTTAATTATGGAACGGACTGATATGGCTGAACTGGAAGTAATTAAGCCTGGATTGAAATGTCAGAAAAAGCCTCATGGAACAAACATTTTTGAAGAGATTCAAAGGGCAATTTGGGAGGAGAGGATAAGAGAGGCAAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGGTGTAAAAAAAGACCCATCTACTCAACGACTCTAAGGGACTTCGTTACCATAAGGCATCCTGTATATGATATTCATCAACAGAAGGCAAACCCTGTTTCATACTTGTTCCCATCAAAACTGGCAGACATTGTTCTCTCTCCAGTTGAACGATTTCAAAGGATGATTGATGTGGTTGAAAGTTTCATGTTTGCAATTCCTGCTGCCCGAGCATCCCCTCCTGTTTGCTGGTGCAGTAAAAGCGAGACTACTGTGTTTCTGAACCCATCTTACAAGCAGCGATGCTCTGATATTCTGTCTCCACTATTGTCACCAATCAGGCCCGCAATTGTTCGTCGGCAAGTATATTTCCCAGATAGGCGACTTATACAATTCGACTGTGGAAAACTGCAGGAGCTAGCAATTTTGCTGAGGAAATTAAAATCAGAAGGTCACCGAGCTCTGATATTCACTCAGATGACTAAGATGCTTGACATATTAGAAGCCTTCATTAATTTGTATGGTTATACTTACATGCGGTTAGATGGATCAACCCAACCAGAGGAGAGGCAGACCTTAATGCAGCGTTTTAACACTAACCCCAAATTTTTTCTTTTCATCTTGTCAACTCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCTGACACGGTTATTTTTTATGATAGTGACTGGAATCCTGCCATGGATCAACAAGCTCAAGATCGGTGCCACAGAATTGGCCAGACACGTGAAGTGCATATATATCGATTGATTAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAAGCAAAAGCGAGCACTTGATGATTTAGTTATACAAAGTGGGGGTTATAATACCGAGTTCTTCAAGAAGCTTGATCCTATGGAACTGTTTTCAGGTCATAAAACACTTTCAATTAAAGACACGCCTAAGGAGAAAAGCCAGAACAGTGGAGAAGTTTCTGTAACTAATGCAGATGTGGAAGCTGCATTAAAACATGTAGAAGATGAGGCAGATTATATGGCACTAAAGAAAGTTGAACTGGAAGAAGCTGTGGATAATCAGGAATTTACAGAAGAAGCCAGTGGGAGACTTGAAGAGGATGACTATGTAAATGAGGATGATGAGCCTCAAGAATTAGGTGAATCTGTTTCCACTTTGAATAAAGAGAATGCATTAGTGCTAAATGGAGGTGATCATAAGGAAGATAAACCACCCTTTGTTGTTGCCAAAGAAGATGATGTTGACATGCTGGCAGATGTCAAACAGATGGCAGAAGCTGCAGCTGCAGCTGGACAGGCTTTATCAGCCTTTGAAAATGAGCTACGCCCTATTGACCGATATGCAATTCGTTTTCTAGAGATGTGGGATCCAATTATAGATAAAGCAGCCTTGGAATCTGAAGTCAGGATTGAGGACACTGAATGGGAATTGGATCGCATTGAAAGGTATAAGGAGGAGATGGAGGCCGAAATTGATGAAGATGAGGAGCCTCTTGTATATGAAAGCTGGGATGCAGATTTTGCAACAACGGCTTACCGACAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTTGAATATGAAGCTAAACTCAAAGAGGAAGCTGAAGAAGAGAAAAAGAGGACTCAGGCACCAAGTGATTCGAAGCCCAAGCCTAAAAAGAAACCCAAGAAAGCAAAGTTCAAATCTCTGAAGAAAGGATCTTTAAGCACTGGCTTAAGAAATGTGAAAGACGAGCTACGAGCAGTGCCAATGGCCATAGATGATGATGTTGCCACTAGTCTTGATTTTGTGTCTCCAAGTTCGAGTATACATAAAAAGCGCAAGAAGTCTAAATTAAGAACTGGTGGTGAAGAAGAAAAGAGATTTAAGAAGTCCAAAAAGTACAAGAGGGACCCTCATGACATTTATGATTCAGATTTAGACTCCAACTCATTAGATATGCAGCAGGATGATCATGCAGAATCAGATCCATGTAGAAGTCTGGTTGTGTTGGAACAGAAAACAGTTGGAAGGAGTAAGATGGGAGGAAAAATATCCATCACTCCAATGCCTGTGAAGCGGGTCTTTATGATAAAATCAGAAAAATTGAAGAAAGGAAATATTTGGTACAAAGATTGTATTCCATCAGCAGATTTTTGGCTGCCTCAGGAGGATGCAGTATTATGTGCAGTTGTTCATGAATATGGTCCTAACTGGAGCTTTGTTAGTGATATACTTCACAGCATGACTGCTGGTGGGGCATATAAGGGAATATATCGTCATCCTGTCCATTGCTGTGAGAGGTTCAGAGAATTATTCCAAAAATATGTCTTGTTCTCTATGGACAATGCAAATCATGAGAAAATCAACAATACATGCTCTGGAAAGGCTCTTAAAGTAACAGAGGATAACATTCGAATGTTGTTAGATGTTGCTTCTGAGCAGGCAAATAGAGAGTTATTACTGCAGAAGCACTTTTATGCATTGATTTCTTGTGTCTGGAAAGCGGCACATGTTGACCGTAGACAAAATCTACATGCTACTTGCAACGGTCTCTATTTCGACCAGAGTTTCTTCTCTTCAATTGGCCAGCATTCACAAAATCCCCGGAACAAACCCTCTGAAAGGATGACGTTTGCTAATTCGGCCCAGAGCAAAATGTTATTGGCCGCTGCACTGGATGACTTGGGAAGTAGGCCAGAGAATGACAAAATAGTCCTCTCTAACCAGGGTAAAAACATGCCGGTGACTGAAGATCAGGCGGATATAACTCTGGAGTTCCCGAAAGAGGAAAGTGATTCCTTATCCTCATTTCCATCTGTTATAAAGTTATCAATAAAATTGGCTGAAGCACCACCTTCTATAAATAAGCACACAAGGAATGATCATCTCAAAAGTAATTTCTATACTGTTGAGAATCGTTTCAGGGAGGTAACAAAAGCTTGTGAAGAAGACAGTTCTCGATGGGCTTCATCAGCATTCCCAACAAATGATGCAAGGTCTCGACCTGGATCCAGGTTACAATCTTCTGGAAAGCAAAGGTCTTCCATCTCCGACGTTATTAAGCCATCTAGATCAAAGACCAAAAGACCATCAGTGGATTCTAGTGAATTGCATCGCCATCAGACTGAGCCATTATTCCCGCCAATGCCGTCGCTTCAGGAACTGACTTTGGATCTCCCTTCATCTACTGTGGACAAATTTGGATTTGACATGGAGAGTGATTCCCCCTTTGATTTGAATGGGGAAAGTTCGTTGGAAAGGGAAAATTTTGGAGTCGTCCCACATTATTATGTACCTGAGTTAATCTCAGACCTTGATGATTGTACCACATTCCCTGAATATACTGATATTAGATAA 6144 0.4098 MASKGPRSKVDHEYKAKRQKAVEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVSLKASKGMLDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAHTPAEKISAEHHMSIQCKDIDGDIINEPKEANVAEYQSDAPDQDEEYDIQSDDVSDDDEQTLEEDEALITKEERQEELAALQNEMDLPIEELLKRYAGDKGELAKHESSPECSEDGGKIVRTGDAVDQEELLSENGDLSITKIGTNDSSMIPGRRCDDSNGDASTPTNDLSQNDDHQSENLEEVPSETAKENAPFDFSDEEEDGDFLSGTEDKDDETTLSEEEKLDRVDAIDPKDEIALLQKESDMPVEELLARYKKDLSDDGDQEDESYYASASSEDHQNSPVHDDAEQKDPAVSMDVDMKSSEQLATIQTQAEEQGQAPCENSEERESEDIIADAAAAARSAQPTGNTFSTTKVRTKSPFLLKYTLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNAKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKVEHVIFCRLSKRQRNLYEDFIASSETQATLANANFFGMIGVIMQLRKVCNHPDLFEGRPIVSSFDMCPIDIQLSSSICSMLLPSTFSTVDLEGLGLLFTHLDYGMTSWESDEVQAIETPATLIMERTDMAELEVIKPGLKCQKKPHGTNIFEEIQRAIWEERIREAKERAAAIAWWNSLRCKKRPIYSTTLRDFVTIRHPVYDIHQQKANPVSYLFPSKLADIVLSPVERFQRMIDVVESFMFAIPAARASPPVCWCSKSETTVFLNPSYKQRCSDILSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKFFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHKTLSIKDTPKEKSQNSGEVSVTNADVEAALKHVEDEADYMALKKVELEEAVDNQEFTEEASGRLEEDDYVNEDDEPQELGESVSTLNKENALVLNGGDHKEDKPPFVVAKEDDVDMLADVKQMAEAAAAAGQALSAFENELRPIDRYAIRFLEMWDPIIDKAALESEVRIEDTEWELDRIERYKEEMEAEIDEDEEPLVYESWDADFATTAYRQQVEALAQHQLMEELEYEAKLKEEAEEEKKRTQAPSDSKPKPKKKPKKAKFKSLKKGSLSTGLRNVKDELRAVPMAIDDDVATSLDFVSPSSSIHKKRKKSKLRTGGEEEKRFKKSKKYKRDPHDIYDSDLDSNSLDMQQDDHAESDPCRSLVVLEQKTVGRSKMGGKISITPMPVKRVFMIKSEKLKKGNIWYKDCIPSADFWLPQEDAVLCAVVHEYGPNWSFVSDILHSMTAGGAYKGIYRHPVHCCERFRELFQKYVLFSMDNANHEKINNTCSGKALKVTEDNIRMLLDVASEQANRELLLQKHFYALISCVWKAAHVDRRQNLHATCNGLYFDQSFFSSIGQHSQNPRNKPSERMTFANSAQSKMLLAAALDDLGSRPENDKIVLSNQGKNMPVTEDQADITLEFPKEESDSLSSFPSVIKLSIKLAEAPPSINKHTRNDHLKSNFYTVENRFREVTKACEEDSSRWASSAFPTNDARSRPGSRLQSSGKQRSSISDVIKPSRSKTKRPSVDSSELHRHQTEPLFPPMPSLQELTLDLPSSTVDKFGFDMESDSPFDLNGESSLERENFGVVPHYYVPELISDLDDCTTFPEYTDIR 2047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02120 2047 SMART helicmild6 1091 1174 IPR001650 -
Trre2g02120 2047 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X3 766 826 - -
Trre2g02120 2047 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Trre2g02120 2047 MobiDBLite consensus disorder prediction 1914 1979 - -
Trre2g02120 2047 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 532 697 IPR014001 -
Trre2g02120 2047 Pfam SNF2-related domain 537 809 IPR000330 GO:0005524|GO:0140658
Trre2g02120 2047 PANTHER HELICASE SRCAP-RELATED 15 1943 - -
Trre2g02120 2047 MobiDBLite consensus disorder prediction 286 300 - -
Trre2g02120 2047 MobiDBLite consensus disorder prediction 312 326 - -
Trre2g02120 2047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 1241 IPR027417 -
Trre2g02120 2047 SMART ultradead3 516 709 IPR014001 -
Trre2g02120 2047 MobiDBLite consensus disorder prediction 252 280 - -
Trre2g02120 2047 MobiDBLite consensus disorder prediction 1547 1591 - -
Trre2g02120 2047 MobiDBLite consensus disorder prediction 1 33 - -
Trre2g02120 2047 Coils Coil 216 236 - -
Trre2g02120 2047 MobiDBLite consensus disorder prediction 348 371 - -
Trre2g02120 2047 MobiDBLite consensus disorder prediction 1467 1500 - -
Trre2g02120 2047 Gene3D - 1035 1279 IPR027417 -
Trre2g02120 2047 MobiDBLite consensus disorder prediction 405 445 - -
Trre2g02120 2047 MobiDBLite consensus disorder prediction 1914 1950 - -
Trre2g02120 2047 MobiDBLite consensus disorder prediction 1534 1591 - -
Trre2g02120 2047 MobiDBLite consensus disorder prediction 252 385 - -
Trre2g02120 2047 SMART bromneu2 23 94 IPR014012 -
Trre2g02120 2047 MobiDBLite consensus disorder prediction 1296 1310 - -
Trre2g02120 2047 CDD DEXQc_SRCAP 520 742 - -
Trre2g02120 2047 MobiDBLite consensus disorder prediction 191 215 - -
Trre2g02120 2047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 503 742 IPR027417 -
Trre2g02120 2047 MobiDBLite consensus disorder prediction 1951 1969 - -
Trre2g02120 2047 CDD SF2_C_SNF 1050 1185 - -
Trre2g02120 2047 MobiDBLite consensus disorder prediction 1467 1484 - -
Trre2g02120 2047 Coils Coil 1401 1421 - -
Trre2g02120 2047 MobiDBLite consensus disorder prediction 186 215 - -
Trre2g02120 2047 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1065 1215 IPR001650 -
Trre2g02120 2047 FunFam Photoperiod-independent early flowering 1 490 765 - -
Trre2g02120 2047 MobiDBLite consensus disorder prediction 1283 1312 - -
Trre2g02120 2047 Coils Coil 1452 1476 - -
Trre2g02120 2047 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 1032 1281 - -
Trre2g02120 2047 Pfam Helicase conserved C-terminal domain 1064 1174 IPR001650 -
Trre2g02120 2047 Pfam HSA domain 27 93 IPR014012 -
Trre2g02120 2047 Gene3D - 489 765 IPR038718 -
Trre2g02120 2047 Gene3D - 766 843 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02120 Trre-Chr2 17298395 17315306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02120 540 812 RAD5 or RAD16-like Gene Family AT5G43530 29.814 1.56e-27 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre2g02120 SNF2_N 1.3e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02120 K11661 - gmx:100794898 3150.53