Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02113 ATGAATGAGAATAAGATTGATTTTCTAGCAAGGATTCAACAAAACCATATACAAAATGGTGATTTTAATTCTGAGCTAGGAAATTGTTCTAGTCAATATTTTGATATTAGAAATGCTTCAAATATTGGAAATTTTAGTCAACCATTTTCTATGGAACAATCACCATATATAGTTCAAAGTCAAAACCATGTTCAAGGAAAATCATCTTCTAACACAATCATAAGCCGTTTTGAGTCACCAACTTCAGCTTTTTATGCAACTGAAATTTGCATGGGTTTTCCACAATATGATTACCAAGTTGGTAATAACAATATTAATAATAATAATAATGGTAGTAACCCTTTTTTGATATCTCAACAATTTTCTAATAATAAGGTTAATGATTTAGAATTTCCTTTGTATCAATGTCCAAAGGAAAATAATCTTTACCTTGATTCAACAAATCAAACAACTAGTCACAATTTTGAGTTGTCAAATTTAAACCCTTTGCAACCATTGATTAGATCTCAATTAAATAGTGATCAATGTTGTAAATCTCCTGAAAATTCCAATGGTGGAAATTTTCTATTCATTGATGATGCTTCTACAATTAGTATGAGTCCATTAATTCATTCTAATGGAAATCATGATCATAAAGTTTCTTGTGGTTCATATGATTTTCCTGTTTCACAACTAAATTTCTCTTATCATCAAGAGAAATTGTCTCCATCAATGTCAACAGGTTCTGGAAATCATGTTTCTAATGGATCATCAGTTTCAAGTAAAACAAGAATAAGATGGACTCAAGATCTTCATGAGAAATTTGTTGAGTGCGTGAATCGCCTTGGAGGCGCCGAGAAGGCAACACCAAAAGCTATATTGAGGCTGATGGAATCAGATGGATTGACAATTTTCCATGTTAAAAGTCATTTGCAGAAATATAGAATTGCAAAATATATGCCAGAACCAGCTCAAGGGAAATCTGAGAAAAGAAGTCATGTAGAGAATGTGAATCTTGATGTCAAATCTGGATTGCAAATAAGAGAGGCACTTCAACTTCAGCTAGATGTTCAGAGGCGTCTTCATGAACAACTAGAGATTCAGAGAAAATTACAGTTGAGAATTGAGGAACAAGGAAAGCAGCTAAAGATGATGTTTGACCAACAACAGAAGAGAAATAGTAGTGACCAATTGAACACTCAAAATTTGGACAATACATCAAATAATGATAAACCAATTAGTCCTAAAGATATTGAGGTTTCAATTTTTGAAGGGTCCGAAAATAATTCCTTATTCCCTTCAAAAATAAGTTAG 1293 0.3194 MNENKIDFLARIQQNHIQNGDFNSELGNCSSQYFDIRNASNIGNFSQPFSMEQSPYIVQSQNHVQGKSSSNTIISRFESPTSAFYATEICMGFPQYDYQVGNNNINNNNNGSNPFLISQQFSNNKVNDLEFPLYQCPKENNLYLDSTNQTTSHNFELSNLNPLQPLIRSQLNSDQCCKSPENSNGGNFLFIDDASTISMSPLIHSNGNHDHKVSCGSYDFPVSQLNFSYHQEKLSPSMSTGSGNHVSNGSSVSSKTRIRWTQDLHEKFVECVNRLGGAEKATPKAILRLMESDGLTIFHVKSHLQKYRIAKYMPEPAQGKSEKRSHVENVNLDVKSGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKRNSSDQLNTQNLDNTSNNDKPISPKDIEVSIFEGSENNSLFPSKIS 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02113 430 MobiDBLite consensus disorder prediction 379 430 - -
Trre2g02113 430 Gene3D - 254 313 - -
Trre2g02113 430 MobiDBLite consensus disorder prediction 379 407 - -
Trre2g02113 430 SUPERFAMILY Homeodomain-like 253 309 IPR009057 -
Trre2g02113 430 MobiDBLite consensus disorder prediction 416 430 - -
Trre2g02113 430 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 250 400 IPR044848 GO:0003700
Trre2g02113 430 Pfam Myb-like DNA-binding domain 259 308 IPR001005 -
Trre2g02113 430 Coils Coil 341 361 - -
Trre2g02113 430 FunFam Myb family transcription factor 254 312 - -
Trre2g02113 430 MobiDBLite consensus disorder prediction 234 254 - -
Trre2g02113 430 Pfam MYB-CC type transfactor, LHEQLE motif 338 384 IPR025756 -
Trre2g02113 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 254 312 IPR017930 -
Trre2g02113 430 NCBIfam myb-like DNA-binding domain, SHAQKYF class 255 310 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02113 Trre-Chr2 17198235 17201502 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02113 247 382 G2-like Transcription Factor Family AT4G28610 59.712 2.89e-52 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre2g02113 Myb_DNA-binding 1.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02113 - - psat:127092497 518.079