Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02108 ATGAGTTCTTGCTTTGTACCTTCTTCTTCTTCTTCTTCTTCATCACCACCTAACTCATCAACCACTGAGTTCCTTCATGGCTTAAAGTTTGGTCAAAAAATTTACTTTGAAGATGCAACAAGTGTTGTAACAGCTCAAAGTACTAAACCAACATCAATGGTTATGAAAAAGGGTACTCATTATCCACCTAGGTGTCAAGTTGAAGGTTGTAAAGTAGATCTGAGTGGTTCTAAGGCTTATTATTCTAGACATAAAGTTTGTTGCATGCATTCAAAATCTCCAACTGTTGTTGTCTCTGGTTTGGAGCAGAGATTTTGCCAACAGTGTAGCAGGTTTCATCAGCTTCCTGAATTCGATCAAGGAAAACGAAGTTGCCGAAGACGACTAGCTGGCCATAATGAAAGGCGAAGAAAGCCTCAACCAAGCTCCTTCTTAACCTCGCGTTTTCCCAGGCTCTCTCGGCATACTCTTGATAACAATGGCAAAGGTCATAACTTTCTGATGGAATGTGGTTTGTACCCAAAGTTTTCTCCGAGAAATGCATTTCCAACTCCGAGAACATCCGAGCCAATTCCCGGTAATCAAACAACACAATTTACCTGGCAGAACCACTCATCAACACCATCCAATTTTTTCCTACAAGGAACAGACTTCCATGGTCCTACTAGACATCCTCCTCCAATCGAAAACTACAATGAAGTCACAGATTCAAGCTGTGCTCTCTCTCTTCTGTCAAACCAAACATGGTATTCTCGAAACACAACAACGCCAAGTGTTGACATGAACAACTTGTTGAATTTCAACGGTTCGCTCATCACACAATCTTCTCAAGGTGCAGCCAATTATCAACTTGCAAATTCCTCTTGGTTTTTAAAAGGCGTTGATTCTCGTAACTGTATGTCGTCCTCCGAGGATGTTCCTGATCTCGGTCTCGGTCAAACTTCACAGGCTATTATTCATAATGATCTTCGTGGCAAGCTTGATGTGTCACATGGCAAGAGGCAATGTTACTGGTCACTTTAA 1023 0.4154 MSSCFVPSSSSSSSSPPNSSTTEFLHGLKFGQKIYFEDATSVVTAQSTKPTSMVMKKGTHYPPRCQVEGCKVDLSGSKAYYSRHKVCCMHSKSPTVVVSGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPQPSSFLTSRFPRLSRHTLDNNGKGHNFLMECGLYPKFSPRNAFPTPRTSEPIPGNQTTQFTWQNHSSTPSNFFLQGTDFHGPTRHPPPIENYNEVTDSSCALSLLSNQTWYSRNTTTPSVDMNNLLNFNGSLITQSSQGAANYQLANSSWFLKGVDSRNCMSSSEDVPDLGLGQTSQAIIHNDLRGKLDVSHGKRQCYWSL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02108 340 ProSiteProfiles Zinc finger SBP-type profile. 62 139 IPR004333 GO:0003677
Trre2g02108 340 MobiDBLite consensus disorder prediction 1 20 - -
Trre2g02108 340 FunFam Squamosa promoter-binding-like protein 14 56 126 - -
Trre2g02108 340 MobiDBLite consensus disorder prediction 129 158 - -
Trre2g02108 340 SUPERFAMILY SBT domain 63 144 IPR036893 GO:0003677|GO:0005634
Trre2g02108 340 Pfam SBP domain 65 138 IPR004333 GO:0003677
Trre2g02108 340 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 10 277 IPR044817 GO:0003677
Trre2g02108 340 Gene3D - 56 126 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02108 Trre-Chr2 17151735 17154954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02108 28 246 SBP-box Gene Family AT2G42200 46.383 9.05e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre2g02108 SBP 7.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02108 - - gmx:100807165 381.719