Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02106 ATGGCTCTCAACTCTTCTACATTCACTGACGATGAACTTTTACGACCATTGCTCTACAACAAAATTCATAATATACCTTTGCCCAATTATATCAACATTCTTGAACAAGATTTGTTCGGTACTAAAAAAAATCCTTGGGAAATTTGGAAAGAGTTCGAGGCTTCTCATTCATATTGTGGAAAAGACTTGTATGTTTTCAGTATCTTAAGGAAGAAATCTGCCACCAGCACACGCATAGTTCGCACTATTGGAATTGGTGCATGGGAAGGTGAAGACTCCGGAAAAAGTATATTCGCCAAAGATACAAATCGACTGCTCGGTATAAGAAAACGTTATCGGTTTGAGAAGAGTGACACTAAACAAGATGGTGGATGGATCTTGCACGAGTATAGCCTTGACAAATCTTTAATAACCAATCCTTCGGCCAAGAATTATGTTCTATGCAGATTTAGGAAGAACTTGAAACTGGATCAAAATACAGGAACAAAAATTTATCACCAACCCAGTTCAGACATAACAAATTGCAATGTTGTACCCAGAAAAAAAGCAAGAATGGACAATGTTGGACAAGATACATCACAAAGAAAGACCGTTGCCGTTCCTCCATGTGCGGCGGCAACAACCACCATATCTGACAATACTACTTTGTTGAGAAAATATATAATTTATGAAGAACCAAGAAAGGAATCAAACACGACAAATGTGGTTAATACAAATACAAATTCTCAATATAAGGAAGAAAAAGGTGTGGAAAATAATTGGCAAGAGACCATTGTTATTGGACTAGAGGCTATCGCCAATTCTGAGAACAATAGTGTTTGGTTGGGGGAAAATATTGGCCAAAAACCAAGAAATCAACTTGACAGTGAAAATAACAAGACTGATGCTGTTAGAATTACTAATGAAACAGAGAGCGAATTTAACAAAGATGTTGAATGCACTGTGAACAAAGAAGATGATGGTGATATCATTATAAACAATGATAGTGATCTTATTGTGAGCAAAGAAGAAGAGGGTTGTGTCGGTTGTGTCACTATGTCTTGGCCTGAGCTTTTTGCACAGGAGCTGTTAAAGAAGAACGAAGGATGCTTGATCAAAGAAGAAGATGTTCCAATGCTTTCCAATGATTTTTATAAGGATTTATTGTTTGAAAAATATAAATATTAG 1167 0.3633 MALNSSTFTDDELLRPLLYNKIHNIPLPNYINILEQDLFGTKKNPWEIWKEFEASHSYCGKDLYVFSILRKKSATSTRIVRTIGIGAWEGEDSGKSIFAKDTNRLLGIRKRYRFEKSDTKQDGGWILHEYSLDKSLITNPSAKNYVLCRFRKNLKLDQNTGTKIYHQPSSDITNCNVVPRKKARMDNVGQDTSQRKTVAVPPCAAATTTISDNTTLLRKYIIYEEPRKESNTTNVVNTNTNSQYKEEKGVENNWQETIVIGLEAIANSENNSVWLGENIGQKPRNQLDSENNKTDAVRITNETESEFNKDVECTVNKEDDGDIIINNDSDLIVSKEEEGCVGCVTMSWPELFAQELLKKNEGCLIKEEDVPMLSNDFYKDLLFEKYKY 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02106 388 Gene3D NAC domain 9 156 IPR036093 GO:0003677|GO:0006355
Trre2g02106 388 PANTHER NAC TRANSCRIPTION FACTOR 56 9 207 - -
Trre2g02106 388 Pfam No apical meristem (NAM) protein 9 132 IPR003441 GO:0003677|GO:0006355
Trre2g02106 388 ProSiteProfiles NAC domain profile. 1 153 IPR003441 GO:0003677|GO:0006355
Trre2g02106 388 SUPERFAMILY NAC domain 9 151 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02106 Trre-Chr2 17144455 17146731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02106 9 154 NAC Transcription Factor Family AT5G62380 34.228 1.83e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre2g02106 NAM 6.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02106 - - tpra:123896066 410.609