Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g02102 | ATGAACAAATCTTCTTCATCCCTTGAAAATGATCATGATCATGCATTTGCAAATGTGAAACAACCAGGTTCAAACAATTACAATCACAAATGTGATTTGTGTAAAAGAGTATTCGCCTCTGGTAATGCTCTTGGTGGGCATAAAACCGCCCATCGCTCCCACATTCTTCCAATAAAGAAGAATTATTCATGTCGTCTTTGCAACAAAGCTTTTTTATCGATCAAAGCTTTGAACGGACACATGAAATGGCACAGTCAAAAAGGTTCCAAGGGTGATGCGTCATCCTCGGAACAAACGAGTAATTATGATGGCCAAAAACCGGCTATTGACTTGTTGACTTATTTGCCACCAATGTTGTATCGAACCAAGAAAAGATGCAGGAAAATTGTCGATAATAATGAAGCCGTTACTGCTGCTCAAATCCTCTTCGATATGTCTCACTCTCGGGACTGA | 453 | 0.3974 | MNKSSSSLENDHDHAFANVKQPGSNNYNHKCDLCKRVFASGNALGGHKTAHRSHILPIKKNYSCRLCNKAFLSIKALNGHMKWHSQKGSKGDASSSEQTSNYDGQKPAIDLLTYLPPMLYRTKKRCRKIVDNNEAVTAAQILFDMSHSRD | 150 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g02102 | 150 | MobiDBLite | consensus disorder prediction | 83 | 104 | - | - | |
Trre2g02102 | 150 | SUPERFAMILY | beta-beta-alpha zinc fingers | 29 | 84 | IPR036236 | - | |
Trre2g02102 | 150 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 5 | 52 | - | - | |
Trre2g02102 | 150 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 62 | 89 | IPR013087 | - | |
Trre2g02102 | 150 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 64 | 84 | IPR013087 | - | |
Trre2g02102 | 150 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 31 | 51 | IPR013087 | - | |
Trre2g02102 | 150 | Pfam | C2H2-type zinc finger | 62 | 86 | - | - | |
Trre2g02102 | 150 | Pfam | C2H2-type zinc finger | 29 | 53 | - | - | |
Trre2g02102 | 150 | SMART | c2h2final6 | 29 | 51 | IPR013087 | - | |
Trre2g02102 | 150 | SMART | c2h2final6 | 62 | 84 | IPR013087 | - | |
Trre2g02102 | 150 | MobiDBLite | consensus disorder prediction | 88 | 104 | - | - | |
Trre2g02102 | 150 | Gene3D | Classic Zinc Finger | 27 | 84 | - | - | |
Trre2g02102 | 150 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 29 | 51 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g02102 | Trre-Chr2 | 17128555 | 17129007 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g02102 | 16 | 84 | C2H2 Transcription Factor Family | AT5G61470 | 32.927 | 2.84e-10 | 55.5 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Trre2g02102 | zf-C2H2_6 | 6.1e-06 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g02102 | - | - | cam:101497742 | 104.375 |