Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02102 ATGAACAAATCTTCTTCATCCCTTGAAAATGATCATGATCATGCATTTGCAAATGTGAAACAACCAGGTTCAAACAATTACAATCACAAATGTGATTTGTGTAAAAGAGTATTCGCCTCTGGTAATGCTCTTGGTGGGCATAAAACCGCCCATCGCTCCCACATTCTTCCAATAAAGAAGAATTATTCATGTCGTCTTTGCAACAAAGCTTTTTTATCGATCAAAGCTTTGAACGGACACATGAAATGGCACAGTCAAAAAGGTTCCAAGGGTGATGCGTCATCCTCGGAACAAACGAGTAATTATGATGGCCAAAAACCGGCTATTGACTTGTTGACTTATTTGCCACCAATGTTGTATCGAACCAAGAAAAGATGCAGGAAAATTGTCGATAATAATGAAGCCGTTACTGCTGCTCAAATCCTCTTCGATATGTCTCACTCTCGGGACTGA 453 0.3974 MNKSSSSLENDHDHAFANVKQPGSNNYNHKCDLCKRVFASGNALGGHKTAHRSHILPIKKNYSCRLCNKAFLSIKALNGHMKWHSQKGSKGDASSSEQTSNYDGQKPAIDLLTYLPPMLYRTKKRCRKIVDNNEAVTAAQILFDMSHSRD 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02102 150 MobiDBLite consensus disorder prediction 83 104 - -
Trre2g02102 150 SUPERFAMILY beta-beta-alpha zinc fingers 29 84 IPR036236 -
Trre2g02102 150 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 5 52 - -
Trre2g02102 150 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 89 IPR013087 -
Trre2g02102 150 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Trre2g02102 150 ProSitePatterns Zinc finger C2H2 type domain signature. 31 51 IPR013087 -
Trre2g02102 150 Pfam C2H2-type zinc finger 62 86 - -
Trre2g02102 150 Pfam C2H2-type zinc finger 29 53 - -
Trre2g02102 150 SMART c2h2final6 29 51 IPR013087 -
Trre2g02102 150 SMART c2h2final6 62 84 IPR013087 -
Trre2g02102 150 MobiDBLite consensus disorder prediction 88 104 - -
Trre2g02102 150 Gene3D Classic Zinc Finger 27 84 - -
Trre2g02102 150 ProSiteProfiles Zinc finger C2H2 type domain profile. 29 51 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02102 Trre-Chr2 17128555 17129007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02102 16 84 C2H2 Transcription Factor Family AT5G61470 32.927 2.84e-10 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g02102 zf-C2H2_6 6.1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02102 - - cam:101497742 104.375