Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02083 ATGGATTCTAATACCCATCAAAGTTATCAACTTAAACAACAGAACCAACCCAATACTGGGTTGCTTCGTTTTCGTTCTGCACCAAGTTCACTTTTTTCAAACCTCACACCTTCTTCTGAATCAGAGAGATTGGTTTCAAGATTTGTGACTGATGATAATATTTCTGGTGCATCTTGTTCTAAGGAAATGAGTGAAATGAATTCTGGTTATGGTGGTGTTGGTGGTGGATTGCCACCTCATTATCCTAGACATGGTTCTGCAGCTTCTACTTCAAGTTCTGCTATGGATGGTTCTTTTGGGTTGGTTGGTTCATTGGGAATGGATCATGAAACATCATCACATAAGAGTTTTGGTTCAAATCTTCTTAGACAGGGTAGTTCCCCTGCTGGTCTTTTCTCCAACATTTCCTTTCAAAATGGGTTTGCCACCATGAAAGGTGTTGGAAACTATGCCGCAGTGAATGGCAATAACGGTGAACTTAGTCCGTCAATTAATCAATTGAACAGTCAAGTTAGCTTCCCTTCAAGAAACGGTTCTTCGTTGGGAATGTTGTCGCAAATCTCTGAAATAGATAGTGAGGATATTGAAGCAACTAGCCCTGATGATGGAGGTAGCAATGGTGATACTACACATTATGGTTCTGGATTTCCCTATAGTTCTTGGAATGATACTCAATCATTCTCAGAAAATCTTAGTGGTTTGAAACGAGGGCGAAGTGGCACCGAAAAAATGTTTTCGGATTTTCAGAGTGGAGGACTAGGAAATCAAGTTCATACATTATCACATCACTTGAGTTTACCAAAGACTTCATCTGAGATGATTGCTATGGAGAAGTTGTTTCAGTTTCCAGATTCTGTTCCGTGTAAAATCAGAGCTAAACGAGGCTGCGCTACTCATCCTCGAAGCATTGCCGAAAGAGTAAGAAGAACTAAGATTAGTGAAAGAATGAGGAAATTACAAGAGCTTGTGCCAAACATGGACAAGCAAACTAACACCTCAGACATGTTGGATTTAGCTGTTGATTACATTAAAAATCTTCAAAAGCAATTCAAGTCTCTAAGTGATAAAAGAGCAAACTGCAAATGTACGAGGATACAGAAGTCAGATACAAATCAAATTCGTTGA 1125 0.3929 MDSNTHQSYQLKQQNQPNTGLLRFRSAPSSLFSNLTPSSESERLVSRFVTDDNISGASCSKEMSEMNSGYGGVGGGLPPHYPRHGSAASTSSSAMDGSFGLVGSLGMDHETSSHKSFGSNLLRQGSSPAGLFSNISFQNGFATMKGVGNYAAVNGNNGELSPSINQLNSQVSFPSRNGSSLGMLSQISEIDSEDIEATSPDDGGSNGDTTHYGSGFPYSSWNDTQSFSENLSGLKRGRSGTEKMFSDFQSGGLGNQVHTLSHHLSLPKTSSEMIAMEKLFQFPDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKNLQKQFKSLSDKRANCKCTRIQKSDTNQIR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02083 374 MobiDBLite consensus disorder prediction 1 21 - -
Trre2g02083 374 Coils Coil 343 363 - -
Trre2g02083 374 Gene3D - 297 369 IPR036638 GO:0046983
Trre2g02083 374 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 25 368 - -
Trre2g02083 374 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 299 359 IPR036638 GO:0046983
Trre2g02083 374 Pfam Helix-loop-helix DNA-binding domain 301 347 IPR011598 GO:0046983
Trre2g02083 374 FunFam Transcription factor bHLH130 family 297 366 - -
Trre2g02083 374 SMART finulus 302 352 IPR011598 GO:0046983
Trre2g02083 374 MobiDBLite consensus disorder prediction 195 214 - -
Trre2g02083 374 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 296 346 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02083 Trre-Chr2 16944891 16947731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02083 1 351 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 49.077 2.43e-95 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre2g02083 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02083 - - gmx:100819605 538.495