Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02078 ATGGAGCAAACCACACTCGAATCGATTCAATTTAACGAAGAAATTCAAGGAATCATGGCTCCGGCGTCGGAAACCGCGAACTCTTTCACCGCACTACTCGAATTACCGCCGACGCAGGTTGTTGAGCTTCTTCACTCATCGGAGATTACCGGAAAACCGCCGAAACCCTATCCCTTGGCCTTCCCTTCCAACACCACCGCAAGATTCTCTGTGTTCGCTGAAGAGAACAAGAACTCAGCGAACGATAACTCACTGCATCATGAGGTGAAGGATGAGCTACCGGAGACTGAAGGAGGTGGCTGTGTATCTGATCCAACAATCGAGAACAAGAAATGCAAAGGTGCGAAGAGGAAGGAGCGAGAGAAGAAGGTTAAAGTGTCGTCTAAGAAAAGCAAAAGCATCGCCGACGAGAATTCCGGCAACGGCGGCGATGAGCTTCCGTATGTTCACGTTCGAGTTCGTCGAGGTCAAGCTACAGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCACGAATGAAACTGTTGCAAGAGCTGGTCCCCGGTTGCAACAAGATATCAGGAACAGCATTGGTTTTGGATAAAATCATCAACCATGTGCAATCTCTACAGCATGAAGTGGAGATTTTATCAATGAAACTAGCAGCAGTTAACCCAATAATTGATTCCAACCTTGACAGCATATTGGCTACAGAAGGTTTGTCTCTCATGGACAGTAACTTCCCTGCTACAGTTGCACCCGTCTTGTGGCAGGAAATCCCTCACAATGGAAACAGACAGCAATTTCAGCAACCGTGGCAATCTGATGCATTCCACCAACCACTTTGGGGGAGGGAAGAAAACAACCCTAATTTCATGACCCCAGAAAACTCACTCTTGAGTTACGACTCATCGGCAAATTCAGTTTCTCTGCACTCAAATCAGATGAAGATGGAGCAATGA 954 0.4686 MEQTTLESIQFNEEIQGIMAPASETANSFTALLELPPTQVVELLHSSEITGKPPKPYPLAFPSNTTARFSVFAEENKNSANDNSLHHEVKDELPETEGGGCVSDPTIENKKCKGAKRKEREKKVKVSSKKSKSIADENSGNGGDELPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQHEVEILSMKLAAVNPIIDSNLDSILATEGLSLMDSNFPATVAPVLWQEIPHNGNRQQFQQPWQSDAFHQPLWGREENNPNFMTPENSLLSYDSSANSVSLHSNQMKMEQ 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02078 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 207 IPR011598 GO:0046983
Trre2g02078 317 SMART finulus 163 213 IPR011598 GO:0046983
Trre2g02078 317 FunFam transcription factor bHLH48-like isoform X1 154 226 - -
Trre2g02078 317 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 79 301 IPR024097 GO:0006355
Trre2g02078 317 MobiDBLite consensus disorder prediction 80 97 - -
Trre2g02078 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 224 IPR036638 GO:0046983
Trre2g02078 317 Pfam Helix-loop-helix DNA-binding domain 161 208 IPR011598 GO:0046983
Trre2g02078 317 MobiDBLite consensus disorder prediction 78 146 - -
Trre2g02078 317 CDD bHLH_AtBPE_like 147 232 - -
Trre2g02078 317 Gene3D - 154 227 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02078 Trre-Chr2 16902635 16908175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02078 2 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 48.248 2.86e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre2g02078 HLH 3.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02078 - - psat:127091567 497.664