Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02076 ATGCAAGTGTTGAACTTGAGAAGAGAGTTTGAAGCACTAAAAATGAAAGAAACCGAAACTGTTAAAGAATTTTTTGATAGAATTTCGAAGGTGGTTTCACAAATCATATTGCTGGGAGAGGATCTCAATGATCAAAGAGTTGTGGAAAAATTTTTAGTGTGTCTTCTGGAGAGGTTTGAAGCAAAAATATCCTCTCTTGAAGAAACTAAGGACTTTTCTCAAATCACACTTGTAGAGCTTGTTAATGCTTTGCAAGCTACTGAACAGAGAAGATCTTTAAGGATGGAAGAAAATGTTGAAGGGGCTTTTATGGCCAAAGGCGAAAACCAAAACTACAATAGTTTTGGGAAAAAGTCTTTAGATGAGAAGAAAGGAAAAGAGGAGGAAGTCAACAACAAAGAAGAGAGTTGGAAAAAGAAGTTTCCAACTTGTCAACTTTGCAAAAAAGATACTCATTTTGAGAAGTTTTGTTGGTACTTGCCAGGAGTTAAATGTAGAGCCTATAATCAACTTGGTCATGTGGAGAAGGTTTGCAAAAACAAAGCAAACCAGCAGGGACAACAAGCCCAAATTGCTGAACACCACCAACAAGAGGAGCAATTATTCATGGATGCTTGCTATTCAACAAGTAGTAGCAAAGAAACATGGCTAATTGATAGTGGGTGCACCAATCACATGACTCATAATGTTGGCATTTTTAAGGAACTTGATAAGTCCTTCTACTCTAAAGTTACTATAGGCAATGGAGAACATGTTGATGTCAAAGGAAAAGGCGTTGTAGCTGTTGAAACTCCCTCATGTATCAAATATATTTCAGAAGTTTTATTTGTACCTGAAATAAATCAAAGTCTTTTAAGTGTTGGGCAAATGATGGAGAAGAACTATTCATTGCATTTCAAATACAAGAAATGCACTATTCTAGATCCTATAGGATCTAAATTAATGACTGTTGAAATGAGAGGTAAAAGTTTTCCAATAGAGTGGAAGCAACCAACCATACCTTTTGTCACACAAGAGACAACAAAGTCACAACAACCCACCAACAAAAAGATAACCTTTTCAGCTGCTGTAGCTACCATAAGAGGTTTAGGATGCACTGTCGGTGCTTCTCAGCAGGTGTTGGTGCCGATAGTTATTCGTGCATCTGCAGATTGA 1155 0.3706 MQVLNLRREFEALKMKETETVKEFFDRISKVVSQIILLGEDLNDQRVVEKFLVCLLERFEAKISSLEETKDFSQITLVELVNALQATEQRRSLRMEENVEGAFMAKGENQNYNSFGKKSLDEKKGKEEEVNNKEESWKKKFPTCQLCKKDTHFEKFCWYLPGVKCRAYNQLGHVEKVCKNKANQQGQQAQIAEHHQQEEQLFMDACYSTSSSKETWLIDSGCTNHMTHNVGIFKELDKSFYSKVTIGNGEHVDVKGKGVVAVETPSCIKYISEVLFVPEINQSLLSVGQMMEKNYSLHFKYKKCTILDPIGSKLMTVEMRGKSFPIEWKQPTIPFVTQETTKSQQPTNKKITFSAAVATIRGLGCTVGASQQVLVPIVIRASAD 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02076 384 PANTHER OS04G0629600 PROTEIN 1 174 - -
Trre2g02076 384 Pfam gag-polypeptide of LTR copia-type 4 92 - -
Trre2g02076 384 Coils Coil 56 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02076 Trre-Chr2 16899630 16900784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02076 335 384 C3H Transcription Factor Family AT1G73760 52.000 2.70e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02076 - - mtr:112421909 470.314