Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02071 ATGACCGTCAAACAAATTTTCCCGGTCGACTACGAGGCCGAAGTATCCTACCGCCTTCTAGAAGCTTCTCACTCCGCCGATCTATCCTTAGCTTTCCACTGTATTTCCGATCCCTCTGTTGACGTCAACTTCACCGGCGCCGTCAATTTGAAAACTACAACCACCGAGTTACTTCTCATCTCTGAATCATCAAGTCAAGTCCGAGTCGAGTTTCAGGAATTCATCACTGACGTCACGCCTCTCTTCCTCGCTGTTCATGCCGGAAACGTCTCACTCGTCAGGAAGTTACTGAGTGTTGGAGCTGATGTAAATCAAAAGCTCTTCAGAGGCTTTGCAACTACTGCAGCAGTGAGGGAGGGCCACATTGATATTCTTGAGACCTTAATTAAGGCAGGGGCATCACAGCCAGCTTGTGAAGAAGCTCTTCTGGAGGCAAGTTGCCATGATCAAGCAGGATGTGGGAAATTGCTCATGAGCTCCGATTTGATCCGACCTCATATTGCCGTACAGGCTCTTGTGGCCGCATGCTGTAGGGGATTTGTAGACGTGGTTGAAACACTCATAAAGTGTGGTGTGGATGCAAGTGTGACGAACCGCATGCTTTTACAGTCACTTAAACCTTCTCTCCACACAAATGCGGATTGTAATGCACTAGTTGCAGCTGTAGTTCATAGGCAGGTCAATGTTGTCAGTTTGCTCCTTCAGAATGGTACTACAACAGATTTTGAAGTACAGCTTGGAGCATGGTCATGGGACATTTCCACCGGTGAAGAACTTCGTGTGGGGGCCGGACTGGGAGAACCATATGGCATCACTTGGTGTGCAATTGAGTATTTTGAAAAAAGTGGTGCTATATTACGCTTGCTCCTGCAACATGTCTCTTCAAATGGTTGTCACCATGGAAGAACCATTCTACACCATGCTATCCTCTGTGGGAATGTCGAGGCTGTTAGGATACTCTTAGAATGTGGTGCTAATGTGGAATCCATAGTGAAAACAACCAGCAAGACAGAGTTCCGTCCTATACACATGGCATCTCGTCTAGGCTTACCCGCAATAATTCAATGCCTTATTGATTTTGGTTGCGATTTGAACTCTCTTACAGACTCTGGTCAATCTGCAAGTTCAATTGCCGAGTCGTACAAGTGGCCACATGGTTTTCAACAAGCAGTGTTGGATGTAATTAGAAAAGGCAAGATACCCAAATCCAGCAATACTTCTACCTTTTCTCCCTTGATATTTGTATCTAAGGTAGGAGATACTGAAGCATTGAAAACTGTCATTGAATCTGGAGAATTTGATCTTGACTATCAAGATGATAGTGGTTTCTCAGCAGTTATGCATACGGCTGTGAAAGGTCATGCTGAATCATTTCGATTGCTTGTATATGCTGGAGCCGATGTAAAGCTGTGCAATAAATATGGTGAAACAGCAATAATGCTATCTAAATTAAATCGGAATTGTGATTTATTTGAAAAAGTAATGCTTGAATTTGCACTTGAAAAGGGTAATCAAAATACTGGCGGCTTTTATGCTTTACACTGTGCAGCTCGTCGTGGTGATTTGCATTCTGTTACATTGCTGACCAGGAATGGTTTTGATGTGAATGTTCCCGATGGGGAGGACTACACTCCACTCATGTTAGCTGCAAGAGAAGGCCATGCGTCCGTTTGTAAGGTTTTAATTTCATACGGTGCTCATTTTAATGCTAAAAATACCAGAGGTGAAACTGCACTTCTACTTGCAAGAAAATTCTCAGGAGGAAAAAACGATGCAGAGGGTGTTATATTAGATGAACTTGCTCGTAAATTGGTATTAGATGGCTCCTATGTTCAGAAACACACAAAATGTGGGAAGGGGAAACCACATGTGAAACAATTACGTATGTTGGGTTCGTCCGGTGTGCTTTGTTGGGGTTTGTCAAGCAGGAGAAGCGTGCTCTGCCGTGATGCGGTTTTAGGGCCAAGCTCAACATTGCGCAGAAATAGGTACAACAGAGGTGATGCAGAAGAACCTGGAATGTTTAGGGTGCTTACTAATAAGAACAGAGAAGTGCATTTTGTATGTGAGGGGGGATTGGAAGCTGCCGAGCTTTGGGTGAGGGGTATTAAACTTGATCTCAGTGAAATGGAAGGTACTGAAGATATGTCATGTAACAATGGTCAATCTACAATCACAAGCAGTGTTCCATTAGATCAGTCACATGAGGTCCATTTTCAAAGTTTTCGAAATGATGAAATGATAAACATAGCTCAAGATCACACCTATTCAATGTTGAGTTTTGTTGATGGAAGTGAATTATATAAATTTGCTCAATTGATGGAGATTAATCCCAATTGGAAAAGGAACGGTGATAATCATTATGAAGCATTTCTTTGGGAGTACTACACTAGAAATAGTGGGAGAGGCAAGAGAGGAAGATTTCAAACTGAAGTTCAAGCAGCCATAGCTCACGATTTACTCGCTATTAAGACGTGGGGTGAATCTACACTTACAAATTTTCCGGTGAGTGGTTACTCAAAGCAAATCTCACAAATGAAAAGTATGAACATAGATCAGTTGATATTTAATATTACAAAGACCCCAAAGAAGAATGGTACTGAATACGTGCGTGTCACAAGACTTGATGGAGATAAATGGGAAGTGAGATTGGAAAATGGAAATGGGAGGCCAACCTATTACTTGGGATTATTTGACACTAAGGAAGAAGCTACTAGGGCATATGATGCGGCAACAAAGAAAGTGAAAGAAGAGGACATGTCCACAAATATTGATCCTAATAATTATCGTAATATTACGCGACCCGTGCAAATGCGCAGACCTAATTTTACCGGTTGTAGTGGAAGTAATTCAAGAGGCCTGCAAAGTTCAAATCAACATGATGATCTTGATATATTTCAAGAATATCAATATCGTCATCATTTTTTACGTCGACATGATGATTTGAACTCATCAGCTCCAATCATACTTTATGATTTTAGTAATCATTCAGTTTATGAAGCTGGAAAAGATGGATATGGGAGCCATGCATATTATCATTCTACTATGGAACATTCAAAGTTTGTTGGATCAAACAATAATATTGGAAACTCTTAA 3096 0.4157 MTVKQIFPVDYEAEVSYRLLEASHSADLSLAFHCISDPSVDVNFTGAVNLKTTTTELLLISESSSQVRVEFQEFITDVTPLFLAVHAGNVSLVRKLLSVGADVNQKLFRGFATTAAVREGHIDILETLIKAGASQPACEEALLEASCHDQAGCGKLLMSSDLIRPHIAVQALVAACCRGFVDVVETLIKCGVDASVTNRMLLQSLKPSLHTNADCNALVAAVVHRQVNVVSLLLQNGTTTDFEVQLGAWSWDISTGEELRVGAGLGEPYGITWCAIEYFEKSGAILRLLLQHVSSNGCHHGRTILHHAILCGNVEAVRILLECGANVESIVKTTSKTEFRPIHMASRLGLPAIIQCLIDFGCDLNSLTDSGQSASSIAESYKWPHGFQQAVLDVIRKGKIPKSSNTSTFSPLIFVSKVGDTEALKTVIESGEFDLDYQDDSGFSAVMHTAVKGHAESFRLLVYAGADVKLCNKYGETAIMLSKLNRNCDLFEKVMLEFALEKGNQNTGGFYALHCAARRGDLHSVTLLTRNGFDVNVPDGEDYTPLMLAAREGHASVCKVLISYGAHFNAKNTRGETALLLARKFSGGKNDAEGVILDELARKLVLDGSYVQKHTKCGKGKPHVKQLRMLGSSGVLCWGLSSRRSVLCRDAVLGPSSTLRRNRYNRGDAEEPGMFRVLTNKNREVHFVCEGGLEAAELWVRGIKLDLSEMEGTEDMSCNNGQSTITSSVPLDQSHEVHFQSFRNDEMINIAQDHTYSMLSFVDGSELYKFAQLMEINPNWKRNGDNHYEAFLWEYYTRNSGRGKRGRFQTEVQAAIAHDLLAIKTWGESTLTNFPVSGYSKQISQMKSMNIDQLIFNITKTPKKNGTEYVRVTRLDGDKWEVRLENGNGRPTYYLGLFDTKEEATRAYDAATKKVKEEDMSTNIDPNNYRNITRPVQMRRPNFTGCSGSNSRGLQSSNQHDDLDIFQEYQYRHHFLRRHDDLNSSAPIILYDFSNHSVYEAGKDGYGSHAYYHSTMEHSKFVGSNNNIGNS 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02071 1031 ProSiteProfiles Ankyrin repeat profile. 508 540 IPR002110 GO:0005515
Trre2g02071 1031 SUPERFAMILY Ankyrin repeat 78 374 IPR036770 -
Trre2g02071 1031 ProSiteProfiles Ankyrin repeat profile. 76 108 IPR002110 GO:0005515
Trre2g02071 1031 Pfam Ankyrin repeats (3 copies) 284 366 IPR002110 GO:0005515
Trre2g02071 1031 Pfam Ankyrin repeats (many copies) 531 582 IPR002110 GO:0005515
Trre2g02071 1031 ProSiteProfiles AP2/ERF domain profile. 767 835 IPR001471 GO:0003700|GO:0006355
Trre2g02071 1031 Gene3D - 13 261 IPR036770 -
Trre2g02071 1031 Gene3D AP2/ERF domain 868 925 IPR036955 GO:0003700|GO:0006355
Trre2g02071 1031 Gene3D AP2/ERF domain 779 837 IPR036955 GO:0003700|GO:0006355
Trre2g02071 1031 ProSiteProfiles Ankyrin repeat profile. 441 473 IPR002110 GO:0005515
Trre2g02071 1031 PANTHER ANKYRIN REPEAT-CONTAINING 13 700 - -
Trre2g02071 1031 SUPERFAMILY Ankyrin repeat 298 583 IPR036770 -
Trre2g02071 1031 SUPERFAMILY DNA-binding domain 872 925 IPR016177 GO:0003677
Trre2g02071 1031 ProSiteProfiles Ankyrin repeat region circular profile. 541 572 - -
Trre2g02071 1031 SMART ANK_2a 213 242 IPR002110 GO:0005515
Trre2g02071 1031 SMART ANK_2a 107 137 IPR002110 GO:0005515
Trre2g02071 1031 SMART ANK_2a 167 196 IPR002110 GO:0005515
Trre2g02071 1031 SMART ANK_2a 407 437 IPR002110 GO:0005515
Trre2g02071 1031 SMART ANK_2a 508 537 IPR002110 GO:0005515
Trre2g02071 1031 SMART ANK_2a 441 470 IPR002110 GO:0005515
Trre2g02071 1031 SMART ANK_2a 541 570 IPR002110 GO:0005515
Trre2g02071 1031 SMART ANK_2a 337 366 IPR002110 GO:0005515
Trre2g02071 1031 SMART ANK_2a 76 105 IPR002110 GO:0005515
Trre2g02071 1031 SMART ANK_2a 300 329 IPR002110 GO:0005515
Trre2g02071 1031 ProSiteProfiles Ankyrin repeat profile. 541 573 IPR002110 GO:0005515
Trre2g02071 1031 ProSiteProfiles AP2/ERF domain profile. 868 925 IPR001471 GO:0003700|GO:0006355
Trre2g02071 1031 Gene3D - 269 382 IPR036770 -
Trre2g02071 1031 ProSiteProfiles Ankyrin repeat region circular profile. 76 104 - -
Trre2g02071 1031 Gene3D - 383 492 IPR036770 -
Trre2g02071 1031 Gene3D - 493 601 IPR036770 -
Trre2g02071 1031 ProSiteProfiles Ankyrin repeat profile. 300 332 IPR002110 GO:0005515
Trre2g02071 1031 ProSiteProfiles Ankyrin repeat profile. 337 369 IPR002110 GO:0005515
Trre2g02071 1031 ProSiteProfiles Ankyrin repeat region circular profile. 508 539 - -
Trre2g02071 1031 SUPERFAMILY DNA-binding domain 782 837 IPR016177 GO:0003677
Trre2g02071 1031 ProSiteProfiles Ankyrin repeat region circular profile. 300 328 - -
Trre2g02071 1031 SMART rav1_2 868 931 IPR001471 GO:0003700|GO:0006355
Trre2g02071 1031 SMART rav1_2 782 841 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02071 Trre-Chr2 16869507 16881990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02071 788 929 AP2-EREBP Transcription Factor Family AT1G51190 36.184 3.10e-21 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02071 - - gmx:100809132 1111.67