Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02068 ATGGATAATTATGAGGTTGTTGAGAAACTTGGAAGAGGAGCTTTAGTTGCAACTTTTCTTGTTCTTCATAAGACCGACAGAAAGAGGTATGTGTTGAAGAAAATTCGTTTGGCCAAGCATACAGAGAAGTCCAAATTGACAGCATACCAAGAGATGGACCTGATAGCACAACTAAATTACCCGTATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGACTATATATACATTATAAGCGGCTATTGCGAAGGAGGTGACATGGCTGAGAATATAAAGAAATCTCGAGGATCTTTTTTTCCAGAGGAGAAAGTCTGCAAATGGATGACTCAATTGTTGCTAGCTGTCGACTACCTGCACTCTAACCGTGTGCTGCACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGAAAACAACATTCGTTTAGGTGACTTTGGTCTTGCAAAGCTACTTAATGCAGATGATCTTGCTTCTTCGGCTGTTGGAGCTCTAAATTACATGTGTCCCGAGATCTTTGCGGATATGCCATATGGTTATAAATCCGACATATGGTCGCTTGGTTGCTGCATGTTTGAAATTGTTGCACATCAGCCGGCATTTCGTGCTCCAGACAGGGCTGGACTTATCAATAAAATAAATAGATCCACCATTTCTCCGATGCCAATTGTTTACTCTTCCACACTGAAACAACTTATCAAGAGCATGCTGAGGAAAAACCCTGAACACAGACCAACAGCAGCTGAATTGTTGAGACATCCTCATTTACAACCTTTTGTACTTCGCTCTCGTAATGCACCATCGGTTTTTCTTCCGGTACATCTCATAAGTTGTGACTCACCGAAAAAATCTTACAAATCTACTGCTGGCAATGACAATAGGGACAAAGAAGAAGGATTAGTAAACCATTTGGAGCATGTTTATCCGTTTGAGGTAAATGGAGATGTACAGACAAGAAACCGACCAAATGGTCGCAAACTAGCAGTGTCAAAAAGCACAGAAGACAACCTTGAGACTAAAATGGTTGATCCTACCAGCTATACATTGGAATTTTCTACTAGTATCAGCGGCTCAAAAGACGAGTCAACAACATCTGAATCAACCGTTTGTAGCGTGTGCAAGGAAGTAGACTTCAAAAGTAGAGCTGCAAGAGGTATGACTGAAAGTGAGATCACTTCAAAGAGTACCCTAGATTCTGCGCATGATAAGCAAGTATTTGCTACTGAAAATTTTCAGAAGTCGTATGCAGTTGACATAAATGCGGCGACTAAAAAAATTGAAGATACTTTCTCCAATGAAGAAAGCAGTGGCAATGATAAAGATGCGTCCACCAGTGATGAGGTCACATCACACTGTACTCGAGATACTCTGGATGTAGAACAAAGATTTACTGTTGAAGATTTTCAGAAGGGTGATTCAGCTGTCATAAATGCATTAACTAGAGAAGACAAATATAAATTTTCCAATAAAGGTTTTGATAAAGCTGAATCACAGAGAGAAAATTTGAAACCCGAGGACTTCATTAAATCGATAATGTCCAGTGAAGATAGAAATAGCATTAATAGAAATGGATCCATTGATGAGGTCACTTCAGAAAGTACTCTAGAGTTTTTGCTTGTAGAACAATTTATTACTGAACATTTTCAGAATCCTGATGCATTTGACATAAATGCAGTGACAACAGAAGTTGAAGGTACTTTTTCTGAAGGTTGTTTTGATACTTTTTCCGAATGTGATTTTGATGCTTTTTCCGAAACACCGAGAGAAGATGTTAAACCTGAGGACTCAAGACGGGAATCTGCCACCGAGAATTTTGAGAACTCAAATACAATTGGCATAAATACAGTGACTACAAAGGTTGAGGATACTCTTTCCGGTGAAGGTTTTGACACCGAGAATTTTCAGAACTCAAATACAATTGCCATAAATACAGTGAATACAAAAGTTGAGGATACTCTTTCCAGTGAAGGTTTTGATAAAGCCGTAGCACAAAGAGAAGATGCCAAACCCGAGGACTCAAGTAAATCAATCATTTACAGCAAAGACTGCAACGGAGATGATAAAGAACGGTCTATCGATGATATCACTTCAAAAAGCACACTGGATTCTGTGCATGCTTCTGAAAACTTTCCAATGTCAAATACAATCGACATAAATGCAGTGACTACAGAAGTTGATGATACTCTTTCCAGTAAAGGTTTTGATAAAGCTGAAGCGGAAAGTGAAGATGTCAAACCTGAGGACTTGAGTGAATCAATTAGTTACAGCGAAGACAACAACAAAGAAGAGTCTATTGATGAGATCACATCAAAGAGCACATTGGATTCATCTAATGAAGAAACACAATTTGCTGCTGAACACTTTCAGAAGTCAGATACAATTGGCATAAATGCAGTGACTACAAAAGTTGATGATGCTCTTTCCAGTGAAGGTTGTGATAAAGCCGAAGCACAAAGAGATGTTCAACCCGAGGATTCAAGCAAACCACTCATTTACGGCAATGGCAATGACAAAGAAGTGTCAATTGATGAGATCACATCAAACACCATACTGGATACATTGCATGAAGAACAGCAAGTTTCTGCTGAACACTTTCAGAAGCCAAATACAATTGACATCAATGTGGTCACTACAAAAGTCGATGATATTTCTTTCAATGATGGTTTTGATAAAGCCGAAGCACAGAATGGAAATTCCAACCCTGACGGCCCTAGTAACTCTATAGTGTCCAGTGAAGACAAAAGTGACAATGATAAAGTTGGTTTCATTGATGAGGAAAAAGCATCACCAATTGTGCATACTGCTAGGGTTGAACAAGACACTGATACTGTAAACTGCTTGAAGGAAAGTAAAAACTCTGAAGCATTTACACCAAATGGTGTTAATAATGACATTGTGGTTGATAAGACACCAAATGAAATTTCCTTAAGCAAAAATAATTCAGTTGGTGGTGATAAAACAAAGAGGGTGTTGAATAATTCCGGTCAACAAAGAGCCGATGCTTTGGAGTCTTTACTTGAATTATGTTCTCATTTACTTAAGCAAGGAAAGCTTGAAGAGCTTACTGCAGTGCTAAGACCGTTCGGAGAAGACACGGTTTCATCCAGAGAAACAGCTATATGGCTGACAAAAAGCCTCATCTCGTCACAAAAATTTAATCCGGAAACCTAG 3177 0.3894 MDNYEVVEKLGRGALVATFLVLHKTDRKRYVLKKIRLAKHTEKSKLTAYQEMDLIAQLNYPYIVEYKDAWVEKEDYIYIISGYCEGGDMAENIKKSRGSFFPEEKVCKWMTQLLLAVDYLHSNRVLHRDLKCSNIFLTKENNIRLGDFGLAKLLNADDLASSAVGALNYMCPEIFADMPYGYKSDIWSLGCCMFEIVAHQPAFRAPDRAGLINKINRSTISPMPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPHLQPFVLRSRNAPSVFLPVHLISCDSPKKSYKSTAGNDNRDKEEGLVNHLEHVYPFEVNGDVQTRNRPNGRKLAVSKSTEDNLETKMVDPTSYTLEFSTSISGSKDESTTSESTVCSVCKEVDFKSRAARGMTESEITSKSTLDSAHDKQVFATENFQKSYAVDINAATKKIEDTFSNEESSGNDKDASTSDEVTSHCTRDTLDVEQRFTVEDFQKGDSAVINALTREDKYKFSNKGFDKAESQRENLKPEDFIKSIMSSEDRNSINRNGSIDEVTSESTLEFLLVEQFITEHFQNPDAFDINAVTTEVEGTFSEGCFDTFSECDFDAFSETPREDVKPEDSRRESATENFENSNTIGINTVTTKVEDTLSGEGFDTENFQNSNTIAINTVNTKVEDTLSSEGFDKAVAQREDAKPEDSSKSIIYSKDCNGDDKERSIDDITSKSTLDSVHASENFPMSNTIDINAVTTEVDDTLSSKGFDKAEAESEDVKPEDLSESISYSEDNNKEESIDEITSKSTLDSSNEETQFAAEHFQKSDTIGINAVTTKVDDALSSEGCDKAEAQRDVQPEDSSKPLIYGNGNDKEVSIDEITSNTILDTLHEEQQVSAEHFQKPNTIDINVVTTKVDDISFNDGFDKAEAQNGNSNPDGPSNSIVSSEDKSDNDKVGFIDEEKASPIVHTARVEQDTDTVNCLKESKNSEAFTPNGVNNDIVVDKTPNEISLSKNNSVGGDKTKRVLNNSGQQRADALESLLELCSHLLKQGKLEELTAVLRPFGEDTVSSRETAIWLTKSLISSQKFNPET 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02068 1058 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g02068 1058 MobiDBLite consensus disorder prediction 587 606 - -
Trre2g02068 1058 MobiDBLite consensus disorder prediction 318 332 - -
Trre2g02068 1058 FunFam serine/threonine-protein kinase Nek6 isoform X2 84 272 - -
Trre2g02068 1058 SUPERFAMILY Protein kinase-like (PK-like) 1 283 IPR011009 -
Trre2g02068 1058 MobiDBLite consensus disorder prediction 665 694 - -
Trre2g02068 1058 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 734 - -
Trre2g02068 1058 Gene3D Transferase(Phosphotransferase) domain 1 84 268 - -
Trre2g02068 1058 MobiDBLite consensus disorder prediction 432 453 - -
Trre2g02068 1058 MobiDBLite consensus disorder prediction 890 920 - -
Trre2g02068 1058 MobiDBLite consensus disorder prediction 587 604 - -
Trre2g02068 1058 MobiDBLite consensus disorder prediction 893 913 - -
Trre2g02068 1058 MobiDBLite consensus disorder prediction 734 771 - -
Trre2g02068 1058 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g02068 1058 MobiDBLite consensus disorder prediction 316 343 - -
Trre2g02068 1058 MobiDBLite consensus disorder prediction 812 837 - -
Trre2g02068 1058 CDD STKc_Nek 3 258 - -
Trre2g02068 1058 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Trre2g02068 1058 MobiDBLite consensus disorder prediction 734 777 - -
Trre2g02068 1058 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Trre2g02068 1058 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02068 Trre-Chr2 16843719 16850665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02068 1 259 MAP Kinase Kinase Kinase AT3G13530 31.418 2.18e-32 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Trre2g02068 Pkinase 5.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02068 K08857 - gmx:100818558 1056.59