Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02061 ATGGCAGACCCTTATTCTAATTTTTTCTCATCAAATTTCTTTCAATTCAATAATACTAATAATAATTCAACACACCATTACCCTTCTTCATACCCTTCACCCCACCACCACCATCATCCTAATTATCTTCACAATTTCATCAACCACACAACTTTTAACAACAGTAACACCAACACTTTTTTCCACTACCATCATCATCTTCATCACCTTCAACCTACAACAACCGCATCTTGTTCTTCTTCTTCTTCATATTCTTCACCTTCTTCTCCTCCTCTAAAAGAAGCCCTTCCACTTTTAAGTCTAATCCCTACAAAACAAGAAGAATATGATGTCTTAGAACAACATCATCATCATCTTCATCATGATTCATCTTGCACTTTGATGGAAGTGGAGGATTGTAGTTATAATAAAGTAGAGAAAAAAGATGATTATGATGATGAAAGTGTGACTGTTGCACTTCATATAGGGTTACCAAACCCTAGTGCTGCTGAGATTGCAACTATGATGATGTCTACTTCATCTTCTGAGATTATGAATAATGAAAGAGATAATCAATTATTACAAGGAGATGTTATAAGTGAAGATTCATCTTCAGCTGGTTTGTTGAGTAGTAATAGATCACAAATCAACAAAGGTCAGTATTGGATCCCTACACCTTCACAAATTCTCATTGGTCCTACACAGTTCTCTTGTCCTGTTTGCTGCAAAACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGACATGGATCACAATACAGAAAAGGCCCCGAATCTCTCCGAGGTACACAACCTACAGGTATGCTAAGGCTTCCGTGTTATTGTTGTTCGCCAGGTTGTCGGAACAACATCGATCATCCAAGAGCGAAGCCGTTGAAAGATTTTAGAACACTTCAAACACATTACAAAAGAAAACATGGAATTAAGCCATTCATGTGTAGAAAATGCGGTAAGGCTTTCGCGGTTAGAGGAGATTGGAGAACTCATGAGAAGAATTGTGGTAAGCTTTGGTATTGTTTATGTGGTTCTGATTTTAAACATAAGAGATCACTAAAGGATCATATAAGAGCTTTTGGAAGTGGTCATGCTGCTTATGGAATCAATGGTTTTGAAGAAGAAGATGAACCTGCTTCTGAAGTTGAACAAGATAATGATACCACTCAGACTCAGTAG 1179 0.3732 MADPYSNFFSSNFFQFNNTNNNSTHHYPSSYPSPHHHHHPNYLHNFINHTTFNNSNTNTFFHYHHHLHHLQPTTTASCSSSSSYSSPSSPPLKEALPLLSLIPTKQEEYDVLEQHHHHLHHDSSCTLMEVEDCSYNKVEKKDDYDDESVTVALHIGLPNPSAAEIATMMMSTSSSEIMNNERDNQLLQGDVISEDSSSAGLLSSNRSQINKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCLCGSDFKHKRSLKDHIRAFGSGHAAYGINGFEEEDEPASEVEQDNDTTQTQ 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02061 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 313 333 IPR013087 -
Trre2g02061 392 MobiDBLite consensus disorder prediction 373 392 - -
Trre2g02061 392 ProSitePatterns Zinc finger C2H2 type domain signature. 231 251 IPR013087 -
Trre2g02061 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 256 IPR013087 -
Trre2g02061 392 Gene3D Classic Zinc Finger 290 366 - -
Trre2g02061 392 SMART c2h2final6 229 251 IPR013087 -
Trre2g02061 392 SMART c2h2final6 313 333 IPR013087 -
Trre2g02061 392 PANTHER ZINC FINGER PROTEIN WIP2 52 387 IPR043584 GO:0003700|GO:0010468
Trre2g02061 392 Gene3D Classic Zinc Finger 228 251 - -
Trre2g02061 392 FunFam Zinc finger protein WIP2 282 364 - -
Trre2g02061 392 SUPERFAMILY beta-beta-alpha zinc fingers 295 333 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02061 Trre-Chr2 16783756 16787037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02061 1 392 C2H2 Transcription Factor Family AT3G57670 58.088 5.42e-146 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g02061 None None None