Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g02044 | ATGGACTCAAATGATTTGGAGCGTGAAAGAGGAATTACTATACTGAGTAAAAATACTTCTGTGACTTATAAAGATGCCAAGAATAATATAATTGATACTTCTGGCCACTATGATTTTGGTGATGAAGTTGAGCGCATCTTGAATATGGTTGATGGAATCCTTCTAGTGGTAGATTCTGTTGAAGGGCCAATGCCGCATACAAGATTTGTCTTAAAGAAGGCTTTAGAGTTTGGTCATGCGGTTGTTGTGGTTGTGAATAAAATCGACAGGTCTTCTGCTCTCCCCGAGTTTGTCGTCAATTCTACTTTTGAACTCTTCATTGAACTAAATGCAACAGATGAACAGTGTGACTTTCAGGTAATATATGCAAGTGGTATAAAAGGGAAAGACGGCTTGTCTCCTGAAAATCTGGCAGATGACTTTGGGCCATTGTTTGAATCCATCACGAGATGTATCCCTGAACCACGTATTGGCAAAAATGGCTCACTCCAAACACTTGTTACAAGTACCGAATCGGAGGGAACTACACAAGTCAAATATAAGATCCCCACCCGTGGTCTACTTGGATTGCGGAATGCAATTTTAACTGCTTCCCGAGGGACAGCTATTCTCAACACTGTCTTTGATTGCTATGGTCCTTGGGCTGGTGATATGAGCACTCGGGATTTAGGCTCGCTGGTTGCTTTTGAGGGTGGAACTAGTACTTCTTATGCAATTGCAAGTTCACAAGAGAGGGGGCAAATGTTTATTGCTCCCGGAGCTGAAGTGTATAAAGGTCAAATTATTGGCATCCATCAACGCTCCGGGGACTTGGCCTTGAATGTTTGCAAGAAAAAAGCTGCAACAAACATTCGTTCCAACAAGGAACAATCAGTGATTCTTGATACACCATTGGATTACAGTCTGGATGACTGCATTGAATACATCCAAGAAGATGAACTAGTAGAGATCATGCCCCAATGTATAAGAATGTGA | 975 | 0.4164 | MDSNDLERERGITILSKNTSVTYKDAKNNIIDTSGHYDFGDEVERILNMVDGILLVVDSVEGPMPHTRFVLKKALEFGHAVVVVVNKIDRSSALPEFVVNSTFELFIELNATDEQCDFQVIYASGIKGKDGLSPENLADDFGPLFESITRCIPEPRIGKNGSLQTLVTSTESEGTTQVKYKIPTRGLLGLRNAILTASRGTAILNTVFDCYGPWAGDMSTRDLGSLVAFEGGTSTSYAIASSQERGQMFIAPGAEVYKGQIIGIHQRSGDLALNVCKKKAATNIRSNKEQSVILDTPLDYSLDDCIEYIQEDELVEIMPQCIRM | 324 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g02044 | 324 | Gene3D | - | 157 | 220 | - | - | |
Trre2g02044 | 324 | Pfam | Elongation factor Tu GTP binding domain | 1 | 153 | IPR000795 | GO:0003924|GO:0005525 | |
Trre2g02044 | 324 | FunFam | GTP-binding protein TypA | 221 | 307 | - | - | |
Trre2g02044 | 324 | PANTHER | TRANSLATION ELONGATION FACTOR-RELATED | 1 | 129 | - | - | |
Trre2g02044 | 324 | NCBIfam | small GTP-binding protein domain | 9 | 112 | IPR005225 | GO:0005525 | |
Trre2g02044 | 324 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1 | 161 | IPR027417 | - | |
Trre2g02044 | 324 | SUPERFAMILY | EF-G C-terminal domain-like | 170 | 250 | IPR035647 | - | |
Trre2g02044 | 324 | Gene3D | - | 1 | 156 | IPR027417 | - | |
Trre2g02044 | 324 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 2 | 17 | IPR031157 | - | |
Trre2g02044 | 324 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 1 | 156 | IPR000795 | GO:0003924|GO:0005525 | |
Trre2g02044 | 324 | PRINTS | GTP-binding elongation factor signature | 9 | 17 | IPR000795 | GO:0003924|GO:0005525 | |
Trre2g02044 | 324 | PRINTS | GTP-binding elongation factor signature | 45 | 56 | IPR000795 | GO:0003924|GO:0005525 | |
Trre2g02044 | 324 | PRINTS | GTP-binding elongation factor signature | 29 | 39 | IPR000795 | GO:0003924|GO:0005525 | |
Trre2g02044 | 324 | PRINTS | GTP-binding elongation factor signature | 81 | 90 | IPR000795 | GO:0003924|GO:0005525 | |
Trre2g02044 | 324 | Gene3D | bipa protein | 221 | 310 | IPR042116 | - | |
Trre2g02044 | 324 | Pfam | Elongation factor G C-terminus | 168 | 218 | IPR000640 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g02044 | Trre-Chr2 | 16542559 | 16545022 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g02044 | 1 | 90 | Eukaryotic Initiation Factors Gene Family | AT3G22980 | 43.333 | 9.90e-14 | 70.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g02044 | K06207 | - | ming:122058267 | 297.745 |