Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02044 ATGGACTCAAATGATTTGGAGCGTGAAAGAGGAATTACTATACTGAGTAAAAATACTTCTGTGACTTATAAAGATGCCAAGAATAATATAATTGATACTTCTGGCCACTATGATTTTGGTGATGAAGTTGAGCGCATCTTGAATATGGTTGATGGAATCCTTCTAGTGGTAGATTCTGTTGAAGGGCCAATGCCGCATACAAGATTTGTCTTAAAGAAGGCTTTAGAGTTTGGTCATGCGGTTGTTGTGGTTGTGAATAAAATCGACAGGTCTTCTGCTCTCCCCGAGTTTGTCGTCAATTCTACTTTTGAACTCTTCATTGAACTAAATGCAACAGATGAACAGTGTGACTTTCAGGTAATATATGCAAGTGGTATAAAAGGGAAAGACGGCTTGTCTCCTGAAAATCTGGCAGATGACTTTGGGCCATTGTTTGAATCCATCACGAGATGTATCCCTGAACCACGTATTGGCAAAAATGGCTCACTCCAAACACTTGTTACAAGTACCGAATCGGAGGGAACTACACAAGTCAAATATAAGATCCCCACCCGTGGTCTACTTGGATTGCGGAATGCAATTTTAACTGCTTCCCGAGGGACAGCTATTCTCAACACTGTCTTTGATTGCTATGGTCCTTGGGCTGGTGATATGAGCACTCGGGATTTAGGCTCGCTGGTTGCTTTTGAGGGTGGAACTAGTACTTCTTATGCAATTGCAAGTTCACAAGAGAGGGGGCAAATGTTTATTGCTCCCGGAGCTGAAGTGTATAAAGGTCAAATTATTGGCATCCATCAACGCTCCGGGGACTTGGCCTTGAATGTTTGCAAGAAAAAAGCTGCAACAAACATTCGTTCCAACAAGGAACAATCAGTGATTCTTGATACACCATTGGATTACAGTCTGGATGACTGCATTGAATACATCCAAGAAGATGAACTAGTAGAGATCATGCCCCAATGTATAAGAATGTGA 975 0.4164 MDSNDLERERGITILSKNTSVTYKDAKNNIIDTSGHYDFGDEVERILNMVDGILLVVDSVEGPMPHTRFVLKKALEFGHAVVVVVNKIDRSSALPEFVVNSTFELFIELNATDEQCDFQVIYASGIKGKDGLSPENLADDFGPLFESITRCIPEPRIGKNGSLQTLVTSTESEGTTQVKYKIPTRGLLGLRNAILTASRGTAILNTVFDCYGPWAGDMSTRDLGSLVAFEGGTSTSYAIASSQERGQMFIAPGAEVYKGQIIGIHQRSGDLALNVCKKKAATNIRSNKEQSVILDTPLDYSLDDCIEYIQEDELVEIMPQCIRM 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02044 324 Gene3D - 157 220 - -
Trre2g02044 324 Pfam Elongation factor Tu GTP binding domain 1 153 IPR000795 GO:0003924|GO:0005525
Trre2g02044 324 FunFam GTP-binding protein TypA 221 307 - -
Trre2g02044 324 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 129 - -
Trre2g02044 324 NCBIfam small GTP-binding protein domain 9 112 IPR005225 GO:0005525
Trre2g02044 324 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 161 IPR027417 -
Trre2g02044 324 SUPERFAMILY EF-G C-terminal domain-like 170 250 IPR035647 -
Trre2g02044 324 Gene3D - 1 156 IPR027417 -
Trre2g02044 324 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 2 17 IPR031157 -
Trre2g02044 324 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 156 IPR000795 GO:0003924|GO:0005525
Trre2g02044 324 PRINTS GTP-binding elongation factor signature 9 17 IPR000795 GO:0003924|GO:0005525
Trre2g02044 324 PRINTS GTP-binding elongation factor signature 45 56 IPR000795 GO:0003924|GO:0005525
Trre2g02044 324 PRINTS GTP-binding elongation factor signature 29 39 IPR000795 GO:0003924|GO:0005525
Trre2g02044 324 PRINTS GTP-binding elongation factor signature 81 90 IPR000795 GO:0003924|GO:0005525
Trre2g02044 324 Gene3D bipa protein 221 310 IPR042116 -
Trre2g02044 324 Pfam Elongation factor G C-terminus 168 218 IPR000640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02044 Trre-Chr2 16542559 16545022 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02044 1 90 Eukaryotic Initiation Factors Gene Family AT3G22980 43.333 9.90e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02044 K06207 - ming:122058267 297.745