Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02040 ATGGAGAAAATGGCACTCACTTCTCAAAACACTTTATTATTCTCATCCACAACACTTCCTAAGAATTCTTCTTCACCACTTTTCTTCTCTAAACACCGTAACAAACACTTTGGACTTTCCTTATCTTCTTCTAAACCTACCCTTCGAATTGCTTCAAGGAACAACAACATTACCCCTATCAAATGTTCTGTTTCTGAAGTCACTGAGCCTATAACTGAGGAGAAGAGGAAATTAATGAGAAGAGCAGATATTAGAAATATTGCAATTGTTGCTCATGTTGATCATGGAAAAACAACTCTTGTTGATGCCATGCTTAAACAAACTAAGGTGTTTCGTGATAATCAAACTGTACAAGAAAGGATAATGGACTCAAATGATTTGGAGCGTGAAAGAGGAATCACTATACTGAGTAAAAATACATCTGTGACTTATAAAGATGCCAAGATTAATATTATTGATACTCCTGGTCACTCTGATTTTGGTGGTGAAGTTGAGCGCATCTTGAACATGGTCGAAGGAATCCTTCTTGTGGTAGATTCTGTCGAAGGGCCAATGCCGCAGACAAGATTTGTCTTAAAGAAGGCTTTAGAGTTTGGTCATGCGGTTGTTGTGGTTGTGAATAAAATAGACAGGTCTTCTGCTCGCCCCGAGTTTGTCGTCAATTCCACTTTTGAACTCTTCATTGAACTAAATGCAACAGATGAACAGTGTGACTTTCAGGTAATATATGCAAGTGGTATAAAAGGGAAAGCAGGGTTGTCTCCTGAAAATCTGGCAGAGGACCTTGGGCCATTGTTTGAATCCATCATGAGATGTATCCCTGGACCACGTATTGATAAAGATGGCTCACTCCAAATGCTTGTTACAAGTACCGAGTTTGAGGGACATAAAGGGCGTATAGCAATTGGGCGCTTGGAAGCTGGAGTTTTAGAAAAAGGGATGGAAGTCAAGGTATGCACTTCAGAAGATTCATGTAGATATGCAAGAGTTAGCGAGCTTTATGTATATGAAAAGTTCTTTAGGGTCCCGGCAGATAGGGTGGAGGCTGGTGATATATGTGCAGTATGTGGAATTTCTGATGTTCAGATTGGGGAGACAATTGCGGATAAAGTGACTGGGAAGGCACTACCTTCCATCAAAGTGGAAGAACCAACAGTGAAAATGGCTTTCTCCATAAACACCTCACCTTTTGTCGGTCGTGAGGGAAAGTATGTTACCAGTAGGAATTTAAGGGACAGGCTTTATCGCGAACTTGAGCGAAATCTGGCTATGAAGGTTGAAGACGGTGAAACAGCCGATACATTCATTGTCAGTGGGCGCGGAACTCTTCATATCACTATACTCATTGAAAATATGCGAAGGGAAGGATATGAATTCATGGTTGGGCCTCCCAAAGTTATCAACAAGAAGGTGAACGATAAAGTGTTGGAGCCGTATGAGATTGCAACTGTGGAGGTACCAGAAGAGCACATGGGAGCTGTTGTTGAACTTCTTGGCAAGAGACGAGGGCAAATGTTTGATATGCAAGGAGTTGGATCGGAGGGAACTACACAAGTCAAATATAAGATCCCAACCCGTGGTCTACTTGGATTGCGGAATGCAATTTTAACTGCTTCCCGAGGGACAGCTATTCTCAACACTGTCTTTGATTGCTATGGTCCTTGGGCCGGTGATATGAGCACTCGGGATTTAGGCTCGCTGGTTGCTTTTGAGGGTGGAACTAGTACTTCTTATGCTATTGCAAGTTCACAAGAGAGGGGGCAAATGTTTATTGCTCCCGGAGCTGAAGTGTATAAAGGTCAAATTATTGGCATCCATCAACGCTCCGGGGACTTGTCCTTGAATGTTTGCAAGAAAAAAGCTGCAACAAACATTCGTTCCAACAAGGAACAATCAGTGATTCTTGATACACCATTGGATTACAGTCTGGATGACTGCATTGAATACATCCAAGAAGATGAACTAGTAGAGATCACTCCCCAATGTATAAGAATGTGCAAGAATCCAAAACTTGCAAAGAAAGGAAGGTCCGCTTAA 2037 0.4188 MEKMALTSQNTLLFSSTTLPKNSSSPLFFSKHRNKHFGLSLSSSKPTLRIASRNNNITPIKCSVSEVTEPITEEKRKLMRRADIRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQTVQERIMDSNDLERERGITILSKNTSVTYKDAKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRSSARPEFVVNSTFELFIELNATDEQCDFQVIYASGIKGKAGLSPENLAEDLGPLFESIMRCIPGPRIDKDGSLQMLVTSTEFEGHKGRIAIGRLEAGVLEKGMEVKVCTSEDSCRYARVSELYVYEKFFRVPADRVEAGDICAVCGISDVQIGETIADKVTGKALPSIKVEEPTVKMAFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFIVSGRGTLHITILIENMRREGYEFMVGPPKVINKKVNDKVLEPYEIATVEVPEEHMGAVVELLGKRRGQMFDMQGVGSEGTTQVKYKIPTRGLLGLRNAILTASRGTAILNTVFDCYGPWAGDMSTRDLGSLVAFEGGTSTSYAIASSQERGQMFIAPGAEVYKGQIIGIHQRSGDLSLNVCKKKAATNIRSNKEQSVILDTPLDYSLDDCIEYIQEDELVEITPQCIRMCKNPKLAKKGRSA 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02040 678 SUPERFAMILY EF-G C-terminal domain-like 477 591 IPR035647 -
Trre2g02040 678 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 285 IPR027417 -
Trre2g02040 678 Gene3D - 81 277 IPR027417 -
Trre2g02040 678 SUPERFAMILY Translation proteins 230 372 IPR009000 -
Trre2g02040 678 FunFam GTP-binding protein TypA 468 561 - -
Trre2g02040 678 CDD BipA_TypA_C 477 556 IPR035651 -
Trre2g02040 678 Gene3D Translation factors 278 378 - -
Trre2g02040 678 FunFam GTP-binding protein TypA 385 490 - -
Trre2g02040 678 Gene3D - 468 561 - -
Trre2g02040 678 SMART EFG_C_a 474 563 IPR000640 -
Trre2g02040 678 PRINTS GTP-binding elongation factor signature 202 211 IPR000795 GO:0003924|GO:0005525
Trre2g02040 678 PRINTS GTP-binding elongation factor signature 130 138 IPR000795 GO:0003924|GO:0005525
Trre2g02040 678 PRINTS GTP-binding elongation factor signature 150 160 IPR000795 GO:0003924|GO:0005525
Trre2g02040 678 PRINTS GTP-binding elongation factor signature 86 99 IPR000795 GO:0003924|GO:0005525
Trre2g02040 678 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 123 138 IPR031157 -
Trre2g02040 678 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 82 277 IPR000795 GO:0003924|GO:0005525
Trre2g02040 678 NCBIfam translational GTPase TypA/BipA 84 673 IPR006298 GO:0003924|GO:0005525
Trre2g02040 678 SUPERFAMILY EF-G C-terminal domain-like 382 466 IPR035647 -
Trre2g02040 678 CDD TypA_BipA 83 276 IPR047041 -
Trre2g02040 678 CDD BipA_III 384 462 IPR047043 -
Trre2g02040 678 CDD BipA_TypA_II 284 377 IPR047042 -
Trre2g02040 678 Gene3D Elongation Factor G (Translational Gtpase), domain 3 385 668 - -
Trre2g02040 678 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 76 252 - -
Trre2g02040 678 Pfam Elongation factor Tu domain 2 298 367 IPR004161 GO:0005525
Trre2g02040 678 FunFam GTP-binding protein TypA 81 277 - -
Trre2g02040 678 FunFam GTP-binding protein TypA 278 378 - -
Trre2g02040 678 NCBIfam small GTP-binding protein domain 84 233 IPR005225 GO:0005525
Trre2g02040 678 Pfam Elongation factor Tu GTP binding domain 83 274 IPR000795 GO:0003924|GO:0005525
Trre2g02040 678 Gene3D bipa protein 562 641 IPR042116 -
Trre2g02040 678 Pfam Elongation factor G C-terminus 475 559 IPR000640 -
Trre2g02040 678 FunFam GTP-binding protein TypA 562 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02040 Trre-Chr2 16506141 16511706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02040 84 211 Eukaryotic Initiation Factors Gene Family AT3G22980 43.846 6.65e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02040 K06207 - gmx:100785222 1145.57