Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02039 ATGGGAAATTGCTGCACAATTCCATCCAGTATCACCAGAAAACAAAAACGAAAGGAAAAGCCTGGAAAACATGGGCCTGAGAAGAAAAACAACACAAAGAAAAACGAGAAGAATAATTTGGTGGTTTTGAAAGAGCCCACGGGCCGAGAGATATTGGTACGATATGAATTAGGGAGGGAATTAGGGAGAGGTGAATTCGGAATAACGTATTTATGTAAAGATAGACAAACGGGTGAAGAACTTGCATGCAAGTCGATTTCGAAGAATAAGCTTAGAACTGCGATTGATATTGAAGATGTTAGAAGAGAAGTTGAAATCATGAGACATTTACCTAAACATCCTAATATTGTTACGTTGAAAGATACTTATGAAGATGATGATGATGTTCATCTTGTTATGGAACTTTGTGAAGGTGGTGAACTTTTTGATCGTATTGTTGCTAAAGGTCATTACACCGAACGCGCCGCCGCTTCCGTCGTTAAAACCATCGTCGAAGTTGTTCAGATGTGCCACAAACATGGTGTGATTCATCGGGATCTCAAACCGGAGAACTTTTTATTTGCAGACAAGAAGGAAACATCACTTTTGAAAGCTATTGACTTTGGTTTATCAATTACCTTTAAACCAGGTGATAAATTTAATGAGATAGTAGGAAGTCCATATTACATGGCCCCTGAAGTCTTAAAGAGAAATTATGGCCCTGAAATTGATATCTGGAGTGCTGGAGTCATTCTTTACATCTTACTTTGTGGTGTCCCTCCGTTTTGGGCAGAAACTGAGCAGGGAGTTGCTCAAGCAATTATACGATCTAATATTGACTTTAATAGGGAGCCATGGCCAAAGGTTTCTGATAATGCAAAAGACCTTGTTAAAAAGATGCTTGATCCTGACCCAAAACGCCGGCTTACTGCACAGGAAGTGTTAGATCATCCATGGTTGCAAAATGCTAAGACAGCTCCTAATGTTTCATTGGGAGAAGCAGTCCGAGCAAGGCTCATGCAATTTTCTGTAATGAACAAACTTAAGAAAACAGCATTGAGGGTGATAGCAGATCATTTGTCTGTAGAAGAAGTTGCTGGAATAAAAGAGGGATTCGAAGTGATGGATACAGAACATAAAGGCAAAATTAACATTGACGAACTACGAGTAGGTTTGAATAAGCTAGGCCACCAAATTCCTGATGGAGATGTCCAAATACTTATGGAAGCTGGTGATGTAGACAAAGATGGGTACCTAGATTATGGAGAGTTTGTGGCCATTTCTATTCACCTGAGAAAGATATCCCATGATGAACACCTCCAAAGAGCATTCCAATTTTTCGATAAAAACGAATCTGGGTATATTGAACTTGAGGAGCTACGTAATGCCTTAGCTGATGAGGTTGACGCAAATAGTGAAGAAGTCATTAAAGCAATTATGCATGATGTGGACACAGATAAGGATGGAAGAATAAGTTATGAGGAATTTGCTGCAATGATGAAGGCTGGCACAGATTGGAGAAAAGCATCAAGACAATATTCGCGAGAGAGGTTTACCAGTCTAAGTCTCAAACTGATGAAGGAAGGGTCATTAGAATTGAACAACGAGGGTAGATGA 1596 0.396 MGNCCTIPSSITRKQKRKEKPGKHGPEKKNNTKKNEKNNLVVLKEPTGREILVRYELGRELGRGEFGITYLCKDRQTGEELACKSISKNKLRTAIDIEDVRREVEIMRHLPKHPNIVTLKDTYEDDDDVHLVMELCEGGELFDRIVAKGHYTERAAASVVKTIVEVVQMCHKHGVIHRDLKPENFLFADKKETSLLKAIDFGLSITFKPGDKFNEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSNIDFNREPWPKVSDNAKDLVKKMLDPDPKRRLTAQEVLDHPWLQNAKTAPNVSLGEAVRARLMQFSVMNKLKKTALRVIADHLSVEEVAGIKEGFEVMDTEHKGKINIDELRVGLNKLGHQIPDGDVQILMEAGDVDKDGYLDYGEFVAISIHLRKISHDEHLQRAFQFFDKNESGYIELEELRNALADEVDANSEEVIKAIMHDVDTDKDGRISYEEFAAMMKAGTDWRKASRQYSRERFTSLSLKLMKEGSLELNNEGR 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02039 531 Gene3D Phosphorylase Kinase; domain 1 57 140 - -
Trre2g02039 531 ProSitePatterns EF-hand calcium-binding domain. 405 417 IPR018247 -
Trre2g02039 531 SMART serkin_6 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g02039 531 MobiDBLite consensus disorder prediction 1 38 - -
Trre2g02039 531 CDD EFh 432 494 IPR002048 GO:0005509
Trre2g02039 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Trre2g02039 531 MobiDBLite consensus disorder prediction 24 38 - -
Trre2g02039 531 FunFam Calcium-dependent protein kinase 1 57 140 - -
Trre2g02039 531 Gene3D Transferase(Phosphotransferase) domain 1 141 321 - -
Trre2g02039 531 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Trre2g02039 531 ProSiteProfiles Protein kinase domain profile. 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g02039 531 ProSitePatterns EF-hand calcium-binding domain. 441 453 IPR018247 -
Trre2g02039 531 PANTHER SERINE/THREONINE-PROTEIN KINASE 38 489 - -
Trre2g02039 531 FunFam Calcium-dependent protein kinase 7 322 497 - -
Trre2g02039 531 Pfam EF-hand domain pair 431 494 IPR002048 GO:0005509
Trre2g02039 531 Coils Coil 447 467 - -
Trre2g02039 531 ProSitePatterns EF-hand calcium-binding domain. 477 489 IPR018247 -
Trre2g02039 531 ProSiteProfiles EF-hand calcium-binding domain profile. 428 463 IPR002048 GO:0005509
Trre2g02039 531 SUPERFAMILY EF-hand 337 506 IPR011992 -
Trre2g02039 531 Pfam Protein kinase domain 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g02039 531 ProSiteProfiles EF-hand calcium-binding domain profile. 356 391 IPR002048 GO:0005509
Trre2g02039 531 Gene3D - 322 496 - -
Trre2g02039 531 ProSiteProfiles EF-hand calcium-binding domain profile. 464 499 IPR002048 GO:0005509
Trre2g02039 531 SMART efh_1 432 460 IPR002048 GO:0005509
Trre2g02039 531 SMART efh_1 360 388 IPR002048 GO:0005509
Trre2g02039 531 SMART efh_1 396 424 IPR002048 GO:0005509
Trre2g02039 531 SMART efh_1 468 496 IPR002048 GO:0005509
Trre2g02039 531 FunFam calcium-dependent protein kinase 13 141 321 - -
Trre2g02039 531 Pfam EF-hand domain pair 372 419 IPR002048 GO:0005509
Trre2g02039 531 CDD STKc_CAMK 54 312 - -
Trre2g02039 531 SUPERFAMILY Protein kinase-like (PK-like) 42 324 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02039 Trre-Chr2 16495181 16499434 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02039 1 529 EF-hand Containing Proteins AT5G19450 75.564 0.0 844
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre2g02039 Pkinase 1.1e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02039 K13412 - gmx:100815320 869.381