Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02038 ATGAATGAAAAGCCCGAGGAAGACTGGCCTGATAAGATAAACATCAACAAAAACACCAAATTGGTGGTGTTAAGAGAGCCCACGGGCCGAGAGATTGGGCTAAGATACGAATTAGGGAGGGAATTAAGGAGAAGTGAATTCGGAATAACATACCTTTGCAAAGACAGACAAACGGGAGAAGAACTTGCTTGCAAGTCGATTTCGAAGAATAAGCTTAGAACTGCGATTGATATTGAAGATGTTAGAAGAGAAGTTGAAATCATGAGGCATTTACCTAAACACCCTAACATAGTTTCCTTGAAGTATACTTATGAAGATGATGATGATGTTCATCTTCTTATGGAACACTGTCAAGGTGGTGGTAACCTTCTAGATCGCATCTTCTTTAGAGGACAGTATAACGAAAGCTCCGCAGCTTCTACCATTAAAACCATCGTCCAACTTGTTCAGATGTGCCACGAACATGGTGTGATGCTTCGGAATCTCAAACCCAAGAACTTTTTGTGTGCAGACAAGAAAGACACAGCATATTTGAAACTTACTGACTTTCGTTCTTCAATTTTTTTTAAACCAGGTGAAAGATTGAATCAGATAGTTGGAAAACTATGTTACACGGCCCCTGAAGTATTACTGAGAAATTATGGCCCTGAAATTGATATCTGGAGTGCTGGTGTCATTCTTTATTTCTTACTTTGTGAAACTGAGCAGGAACTTGCTGAAGAAATTGCACAATCTGATATTTACTTTAAATGGAAGCCATGGCCAAATGTTTCTGATAATGCAAAAGATCTTGTTAAAAAGATGCTTGATCCTGACCCAAAATGCCGGCTTACTGCACAAGAAGTGCTAGATCATCCATGGTTGCAAAATGATAAGACAGCTCCTAATGTTTCATTGAGAGAAGCAGTCCGAGCAAGGCTCATACAATTTTCTGTAATGAACAAACTTAAGAAAACCGCATTGAGGGTGATAGCAGATCATTTGTCTGTAGAAGAAGTTGCTGGAATAAAAGAGGGATTCGAAGTGATGGATACAGAACATAAAGGCAAAATTTACATTGACGAACTACGAGTAGGGTTGCATAAGCTAGGCCACCAAATTCCTGATGGAGATGTCCAAATACTTATGGAAGCTGGCGATTTAGACAAAGATGGGTACCTAGATTATGGAGAGTTTGTAGCCATTTCTATTCACCTGAGAAAGATATCCCATGATGAACACCTCCAAAGAGCATTCCAATTTTTCGATAAAAACGAATCTGGGTATATTGAACTTGAGGAGCTACGTAATGCCTTGGCTGATGAGGTTGACGGAAATAGCGAAGAAGTCATTAAAGCAATTATGCATGATGTGGACACAGATAAGGATGGAAAAATAAGTTATGAGGAATTTGCTGCAATGATGAAGGCTGGCACAGATTGGAGAAAAGCATCAAGGCAATATTCGCGAGAGAGGTTCACCAGTCTAAGTCTCAAACTGATGAAGGAAGGGTCATTAGAATTGAACAATGAGGGTAGATGA 1521 0.3958 MNEKPEEDWPDKININKNTKLVVLREPTGREIGLRYELGRELRRSEFGITYLCKDRQTGEELACKSISKNKLRTAIDIEDVRREVEIMRHLPKHPNIVSLKYTYEDDDDVHLLMEHCQGGGNLLDRIFFRGQYNESSAASTIKTIVQLVQMCHEHGVMLRNLKPKNFLCADKKDTAYLKLTDFRSSIFFKPGERLNQIVGKLCYTAPEVLLRNYGPEIDIWSAGVILYFLLCETEQELAEEIAQSDIYFKWKPWPNVSDNAKDLVKKMLDPDPKCRLTAQEVLDHPWLQNDKTAPNVSLREAVRARLIQFSVMNKLKKTALRVIADHLSVEEVAGIKEGFEVMDTEHKGKIYIDELRVGLHKLGHQIPDGDVQILMEAGDLDKDGYLDYGEFVAISIHLRKISHDEHLQRAFQFFDKNESGYIELEELRNALADEVDGNSEEVIKAIMHDVDTDKDGKISYEEFAAMMKAGTDWRKASRQYSRERFTSLSLKLMKEGSLELNNEGR 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02038 506 Pfam EF-hand domain pair 347 394 IPR002048 GO:0005509
Trre2g02038 506 Gene3D Phosphorylase Kinase; domain 1 26 117 - -
Trre2g02038 506 Pfam EF-hand domain pair 406 469 IPR002048 GO:0005509
Trre2g02038 506 ProSiteProfiles Protein kinase domain profile. 36 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g02038 506 Gene3D Transferase(Phosphotransferase) domain 1 119 299 - -
Trre2g02038 506 ProSitePatterns EF-hand calcium-binding domain. 416 428 IPR018247 -
Trre2g02038 506 SMART efh_1 407 435 IPR002048 GO:0005509
Trre2g02038 506 SMART efh_1 371 399 IPR002048 GO:0005509
Trre2g02038 506 SMART efh_1 443 471 IPR002048 GO:0005509
Trre2g02038 506 SMART efh_1 335 363 IPR002048 GO:0005509
Trre2g02038 506 ProSiteProfiles EF-hand calcium-binding domain profile. 331 366 IPR002048 GO:0005509
Trre2g02038 506 Pfam Protein kinase domain 38 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g02038 506 FunFam Calcium-dependent protein kinase 7 297 472 - -
Trre2g02038 506 ProSiteProfiles EF-hand calcium-binding domain profile. 439 474 IPR002048 GO:0005509
Trre2g02038 506 SUPERFAMILY EF-hand 312 481 IPR011992 -
Trre2g02038 506 ProSitePatterns EF-hand calcium-binding domain. 380 392 IPR018247 -
Trre2g02038 506 SUPERFAMILY Protein kinase-like (PK-like) 34 293 IPR011009 -
Trre2g02038 506 CDD STKc_CAMK 35 287 - -
Trre2g02038 506 PANTHER SERINE/THREONINE-PROTEIN KINASE 35 464 - -
Trre2g02038 506 Gene3D - 300 471 - -
Trre2g02038 506 CDD EFh 407 469 IPR002048 GO:0005509
Trre2g02038 506 ProSiteProfiles EF-hand calcium-binding domain profile. 403 438 IPR002048 GO:0005509
Trre2g02038 506 ProSitePatterns EF-hand calcium-binding domain. 452 464 IPR018247 -
Trre2g02038 506 FunFam Calcium-dependent protein kinase 1 38 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02038 Trre-Chr2 16479251 16483249 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02038 20 504 EF-hand Containing Proteins AT5G19450 69.371 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre2g02038 Pkinase 3.9e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02038 K13412 - gmx:100815320 731.48