Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02026 ATGGGAACTCCAGAATTCCCAGATCTTGGAAAACACTGTGCTTTCTCTGATTGCAGCCTCATTGATTTTTTACCCTTCACTTGCGATCGCTGCAACCAGGTGTATTGTTTGGAACACCGAAGCTATATCAAACATCAGTGTGCAAAAGCTGACAAGCAAGATGTCACTGTAGTAATATGTCCACTTTGCGCCAAAGGAGTTCGCCTAGTTCCTGAACAAGATCCAAACATAACATGGGAGAATCATGTTAACACCGACTGCGACCCATCAAATTATGAAAAAGTTACAAAGAAGAAAAAATGCCCTGCAGCTGGATGCAAAGAGATCTTAGTATTCTCAAACACAATTAAGTGTAGGGATTGTATGGTAGACCATTGTTTGAAGCATAGGTTTGGACCTGATCACAAATGTCCAGGACCGAAAAAGTTGGAATCAAATTTCTCATTTATGAGTCTAATGAGTAGGAATAAGAAACCGGAGTCTAAAAAAACCAATTCAAGTTCAACCTCCTCCTCATCTAAGTGGACAACGAGCTTTCTTAATGCCGCTTCTAATATTCGAGCTTCAGCTGAGGCTGGAATGTCGAAGTTGAGTGGTGAAATTAACCAAGCATGGGGGACATCAAGTGATGGTGGGGGCAAGAGCAATAGCAGTGGTCAAGTGGAGCAATGCCCTCAATGTGATGCTAAGTTTTCCTCGGTCACTACTTTGGTGGATCATGTACAGAAAGTTCATGAAAGAAGCGGTAATCGATCTGCTGCAAAAGTTACAATTGATGTGTGTCCTAAGTGTAGTAAAGGATTCAGAGACCCTGTGTCCCTTGTGGAGCATGTTGAGAGAGATCATGGCGGCAGTTCGAGTGGGGAGCATAGATATTAA 879 0.4255 MGTPEFPDLGKHCAFSDCSLIDFLPFTCDRCNQVYCLEHRSYIKHQCAKADKQDVTVVICPLCAKGVRLVPEQDPNITWENHVNTDCDPSNYEKVTKKKKCPAAGCKEILVFSNTIKCRDCMVDHCLKHRFGPDHKCPGPKKLESNFSFMSLMSRNKKPESKKTNSSSTSSSSKWTTSFLNAASNIRASAEAGMSKLSGEINQAWGTSSDGGGKSNSSGQVEQCPQCDAKFSSVTTLVDHVQKVHERSGNRSAAKVTIDVCPKCSKGFRDPVSLVEHVERDHGGSSSGEHRY 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02026 292 SMART c2h2final6 259 282 IPR013087 -
Trre2g02026 292 SMART c2h2final6 222 245 IPR013087 -
Trre2g02026 292 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Trre2g02026 292 ProSitePatterns Zinc finger C2H2 type domain signature. 224 245 IPR013087 -
Trre2g02026 292 ProSitePatterns Zinc finger C2H2 type domain signature. 261 282 IPR013087 -
Trre2g02026 292 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Trre2g02026 292 MobiDBLite consensus disorder prediction 202 222 - -
Trre2g02026 292 SUPERFAMILY AN1-like Zinc finger 93 146 IPR035896 -
Trre2g02026 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 259 287 IPR013087 -
Trre2g02026 292 Gene3D - 80 171 IPR035896 -
Trre2g02026 292 SUPERFAMILY AN1-like Zinc finger 6 50 IPR035896 -
Trre2g02026 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 222 250 IPR013087 -
Trre2g02026 292 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Trre2g02026 292 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Trre2g02026 292 Gene3D - 2 60 IPR035896 -
Trre2g02026 292 MobiDBLite consensus disorder prediction 155 174 - -
Trre2g02026 292 Gene3D Classic Zinc Finger 196 285 - -
Trre2g02026 292 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Trre2g02026 292 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Trre2g02026 292 SUPERFAMILY beta-beta-alpha zinc fingers 223 278 IPR036236 -
Trre2g02026 292 Pfam C2H2-type zinc finger 223 245 - -
Trre2g02026 292 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02026 Trre-Chr2 16379177 16381639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02026 1 288 C2H2 Transcription Factor Family AT2G41835 62.847 9.01e-128 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g02026 zf-AN1 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02026 - - gmx:100786272 492.271