Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02005 ATGCCAGCCGACCTTTTTATCAAATCTCTCGAAACCATTCCCTTCAATAATCCCTTTGCCAATCCGGAGGTCGGTGTCATCGTATTTTCTAGCACTGGCAAGCTCTATGAGTTCTCAAGGCCAAGCATGGAGCACATCCTTTCAAGGTACGGTGCAGAGAAACAGCAGCCTGGTGCTCAGCCTCCACAACAAGATGTGGAGCTTGATACTCCCATTCTGCAGGAAGAAATGGCAAAACTGCGCTCAGCTTACGTGATGACGGGTAAGGAGCTTGATGGATTGCAGATTAAGGAACTGCAGGACCTAGAAAATCAACTGAGTGAAGCGATATTAGCTGTCAAAACCAAGAAGGAACAAGTACTTGTTGAACAACTTGAGAAATCAAAGTTACAGGAGCAAATGGCTATGGCAGAGATTGAAGATCTGCGTAAACAACTTGAGGAGATAAAGAATAAAACAAAGTCAGAGTTAGGGTCGTCATCATCAGATCATGGTAGCAGGTATAGATCATTGAGGATGAGAGCTTCCAACAGCTAG 537 0.4469 MPADLFIKSLETIPFNNPFANPEVGVIVFSSTGKLYEFSRPSMEHILSRYGAEKQQPGAQPPQQDVELDTPILQEEMAKLRSAYVMTGKELDGLQIKELQDLENQLSEAILAVKTKKEQVLVEQLEKSKLQEQMAMAEIEDLRKQLEEIKNKTKSELGSSSSDHGSRYRSLRMRASNS 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02005 178 Coils Coil 99 119 - -
Trre2g02005 178 SUPERFAMILY SRF-like 21 52 IPR036879 GO:0003677|GO:0046983
Trre2g02005 178 PANTHER SERUM RESPONSE FACTOR HOMOLOG 23 144 - -
Trre2g02005 178 MobiDBLite consensus disorder prediction 155 178 - -
Trre2g02005 178 Coils Coil 122 159 - -
Trre2g02005 178 Gene3D - 20 69 IPR036879 GO:0003677|GO:0046983
Trre2g02005 178 MobiDBLite consensus disorder prediction 150 178 - -
Trre2g02005 178 Pfam K-box region 73 146 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre2g02005 178 ProSiteProfiles K-box domain profile. 59 152 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02005 Trre-Chr2 16203251 16206231 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02005 19 151 MADS-box Gene Family AT5G13790 42.336 1.71e-26 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02005 - - tpra:123891316 226.868