Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g02004 ATGCAATCAATCGTTAATAGACCCGCTTCAAGAGCTTCAAATACCTTTTATTTCCCTATTATATTGTATAGCCAATTATTACCAAGACACATTGTCACGTCGTTCTTGAAAAAATCCGAGCCAAATATGCCAGCCGACCTTTTTATCAAATCTCTCGAAACCATTCCCTTCAATAATCCCTTTGCCAATCCGGAGGTCGGTGTCATCGTATTTTCTAGCACTGGCAAGCTCTATGAGTTCTCAAGGCCAAGCATGGAGCACATCCTTTCAAGGTACGGTGCAGAGAAACAGCAGCCTGGTGCTCAGCCTCCACAACAAGATGTGGAGCTTGATACTCCCATTCTGCAGGAAGAAATGGCAAAACTGCGCTCAGCTTACGTGATGACGGGTAAGGAGCTTGATGGATTGCAGATTAAGGAACTGCAGGACCTAGAAAATCAACTGAGTGAAGCGATATTAGCTGTCAAAACCAAGAAGGAACAAGTACTTGTTGAACAACTTGAGAAATCAAAGTTACAGGAGCAAATGGCTATGGCAGAGATTGAAGATCTGCGTAAACAACTTGAGGAGATAAAGAATAAAACAAAGTCAGAGTTAGGGTCGTCATCATCAGATCATGGTAGCAGGTATAGATCATTGAGGATGAGAGCTTCCAACAGCTAG 663 0.4284 MQSIVNRPASRASNTFYFPIILYSQLLPRHIVTSFLKKSEPNMPADLFIKSLETIPFNNPFANPEVGVIVFSSTGKLYEFSRPSMEHILSRYGAEKQQPGAQPPQQDVELDTPILQEEMAKLRSAYVMTGKELDGLQIKELQDLENQLSEAILAVKTKKEQVLVEQLEKSKLQEQMAMAEIEDLRKQLEEIKNKTKSELGSSSSDHGSRYRSLRMRASNS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g02004 220 Coils Coil 141 161 - -
Trre2g02004 220 PANTHER SERUM RESPONSE FACTOR HOMOLOG 65 186 - -
Trre2g02004 220 ProSiteProfiles K-box domain profile. 101 194 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre2g02004 220 Coils Coil 164 201 - -
Trre2g02004 220 MobiDBLite consensus disorder prediction 197 220 - -
Trre2g02004 220 MobiDBLite consensus disorder prediction 192 220 - -
Trre2g02004 220 Gene3D - 62 111 IPR036879 GO:0003677|GO:0046983
Trre2g02004 220 SUPERFAMILY SRF-like 63 94 IPR036879 GO:0003677|GO:0046983
Trre2g02004 220 Pfam K-box region 115 188 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g02004 Trre-Chr2 16203125 16206231 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g02004 61 193 MADS-box Gene Family AT5G13790 42.336 4.39e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g02004 - - tpra:123891316 226.868