LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre2g01990	ATGGAGGATTTTCTCAATCCTAAGGCTTTCGAATTGGAAAACAAGGATCGTTCAATCGAAGCTCTCAGTAGATGGAGATCTGCCGTTTCTTTGGTCAAGAATCCTCGGAGGAGATTTCGCCACGCTGCAGATCTAGTCAAACGCCGTCAAGCAGCGGAAAATCAAAAGAAAATTCAGGGGAGGATTCGCACTGTCATCAACGTTCAACGAGCAGCACTGCATTTTACGGATGCCATTAGTACACCTGAATTCAAGGTATCAGAAAAGACAAAAGCAGCTGGTTTTGGTATCGAACCAGATGATATTGCATCAGTTATTCGAAGCCATGATTACAAGAACTATAAAAAAGTTGGTGAAGTTCAAGGGGTTATAAGTAAACTTTCAGTCTCAGTCGATGAAGGTGTCAGTCAAGACAGTATACAGAGTAGGCAAGAGATTTATGGACTCAACCGATATACCGAGAAGCCATCTAAAAGTTTTCTGATGTTCGTTTGGGATGCACTGCATGACATGACACTGATCATTCTAATTGTTTGTGCTTTAGTTTCCATTGGCATAGGGCTTCCCACTGAAGGGTTCCCAAAGGGGGTTTATGATGGTCTTGGAATCATACTTAGTATATTCTTGGTAGTCACTGTTACTGCTGTAAGTGACTACCAGCAATCTCTACAGTTCTTAGATTTGGACAAAGAGAAGAAAAAGATCTCTATTCATGTTACCAGGGATGGTAAAAGACAGAAGGTCTCAATTTACGACTTGGTAGTAGGAGATATAGTTCATTTGTCAACTGGTGATCAAGTTCCAGCTGATGGAATTTTTATACAAGGATACTCATTGCTTATCGATGAATCAAGTTTGTCAGGTGAGAGCGAACCTGTAAATGTAGACGGTCGAAGACCTTTTCTTCTTTCGGGAACCAAAGTGCAAGACGGTCAAGGGAAGATGATAGTTACAACTGTTGGCATGAGGACTGAATGGGGAAAGTTGATGGAAACTTTGAGTGAAGGAGGAGAGGATGAGACTCCACTTCAGGTGAAATTGAATGGAGTTGCAACAGTTATTGGTAAAATCGGTTTAACTTTTGCTGTGCTGACATTTTTGGTGTTGACAATACGGTTTGTGGTTGAAAAAGCAGTTCATGGAAGCTTCAGTAGTTGGTCTTCAGAGGATGCACTAAAGCTACTAGATTACTTTGCTATTGCTGTAACCATAATTGTTGTTGCAATTCCAGAAGGATTACCATTAGCTGTAACACTCAGTCTTGCATTTGCGATGAAAAAATTGATGAATGATAGGGCTCTTGTGAGGCATCTTTCTGCTTGTGAGACTATGGGGTCAGCTAGTTGCATTTGCACCGATAAGACAGGAACATTGACAACCAACCATATGGTGGTCGACAAAATTTGGATATGCGAAAAGACAACAGAGATAAAAGGTGATGAGAGTACTGATAAATTGAAATCAGAGATATCTGATGAAGTTCTAAGCATCCTTTTGCAGGCTATATTTCAGAATTCTTCGTCGGAAGTAGTTAAAGACAAAGAAGGAAAGCAAACAATATTGGGAACACCAACAGAATCTGCATTATTGGAATTTGGCTTGGTTTCAGGTGGTAATTTTGATGAACAGCGTAAATCTTGTAAGATACTTAAGGTTGAGCCTTTCAATTCCGACAGGAAGAAGATGTCTGTGCTCATAGGTCTCCCCGATGGAGGGGTCCGAGCTTTCTGCAAAGGTGCATCAGAAATAGTGTTGAAAATGTGTGATAAAATAATTGATAATAATGGAACAACTGTTGATCTTCCTGAAGAGAAAGCAAAGATTGTGAATGACATTATAGATGGATTTGCCAACGAAGCTTTGAGAACTCTTTGTTTGGCTGTCAAAGAGATAGATGAAACAAAAGGCGAAACCAGCATCCCTGAAAATGGATATACTCTGATAGCCATTGTGGGAATCAAGGATCCTGTGCGCCCTGGAGTTAAGGAAGCTGTTCAAAAATGTTTAGCAGCTGGAATAAGTGTCCGCATGGTCACCGGTGATAACATAAATACAGCTAAGGCTATAGCTAGAGAATGTGGTATACTTACTGAAGGTGGTGTAGCTATAGAAGGGCCAGAATTTCGCAATTTGTCTCCAGAACAAATGAAGGATATCATACCAAGAATTCAGGTAATGGCACGATCGTTGCCTCTTGACAAGCATACCTTGGTAACCCGTTTGAGGAATATGTTTGGTGAGGTTGTAGCTGTTACTGGTGATGGAACCAATGATGCTCCTGCGCTGCATGAGTCAGACATTGGACTTGCCATGGGAATTGCTGGAACCGAGGTTGCCAAAGAAAATGCTGACGTGATTATAATGGATGACAACTTCACTACTATTGTCAAAGTGGCCAAATGGGGACGTGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACGGTCAATGTTGTTGCTCTGATTACCAACTTTGTTTCTGCATGCATCACTGGAGCTGCTCCACTAACAGCTGTTCAATTGCTTTGGGTTAACTTGATTATGGACACTCTTGGTGCATTGGCACTGGCTACTGAACCTCCTAATGATGGACTTATGGAAAGACAACCAGTTGGAAGGAAAGCAAGTTTTATTACCAAACCAATGTGGAGGAATATCTTTGGTCAAAGTTTGTATCAACTAATTATCCTTGGAGTTCTAAATTTTGAGGGGAAGAGGCTACTTGGACTAAGTGGCTCAGATGCAACTGCTGTACTCAACACTTTGATATTCAACTCCTTTGTGTTTTGTCAGGTGTTCAATGAGATAAACAGCAGAGAAATTGAAAAGATAAACATATTCAAAGGCATGTTTGACAGCTGGATATTTTTAAGTGTTATTATCGCCACAGCGATATTTCAAGTAATCATAGTTGAGTTCCTAGGAGCATTTGCCAGCACAGTGCCTCTAACCTGGCAATTCTGGTTACTCAGTGTGTTGTTTGGTGTACTTAGCATGCCTTTAGCTGCTATCCTCAAATGCATACCAGTTGGAAGTGATCCCACAAAGCAACATCATGACGGTTATGAGGCACTTCCTTCTGGTCCTGAAAGTGTGTGA	3108	0.4086	MEDFLNPKAFELENKDRSIEALSRWRSAVSLVKNPRRRFRHAADLVKRRQAAENQKKIQGRIRTVINVQRAALHFTDAISTPEFKVSEKTKAAGFGIEPDDIASVIRSHDYKNYKKVGEVQGVISKLSVSVDEGVSQDSIQSRQEIYGLNRYTEKPSKSFLMFVWDALHDMTLIILIVCALVSIGIGLPTEGFPKGVYDGLGIILSIFLVVTVTAVSDYQQSLQFLDLDKEKKKISIHVTRDGKRQKVSIYDLVVGDIVHLSTGDQVPADGIFIQGYSLLIDESSLSGESEPVNVDGRRPFLLSGTKVQDGQGKMIVTTVGMRTEWGKLMETLSEGGEDETPLQVKLNGVATVIGKIGLTFAVLTFLVLTIRFVVEKAVHGSFSSWSSEDALKLLDYFAIAVTIIVVAIPEGLPLAVTLSLAFAMKKLMNDRALVRHLSACETMGSASCICTDKTGTLTTNHMVVDKIWICEKTTEIKGDESTDKLKSEISDEVLSILLQAIFQNSSSEVVKDKEGKQTILGTPTESALLEFGLVSGGNFDEQRKSCKILKVEPFNSDRKKMSVLIGLPDGGVRAFCKGASEIVLKMCDKIIDNNGTTVDLPEEKAKIVNDIIDGFANEALRTLCLAVKEIDETKGETSIPENGYTLIAIVGIKDPVRPGVKEAVQKCLAAGISVRMVTGDNINTAKAIARECGILTEGGVAIEGPEFRNLSPEQMKDIIPRIQVMARSLPLDKHTLVTRLRNMFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFTTIVKVAKWGRAIYINIQKFVQFQLTVNVVALITNFVSACITGAAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMERQPVGRKASFITKPMWRNIFGQSLYQLIILGVLNFEGKRLLGLSGSDATAVLNTLIFNSFVFCQVFNEINSREIEKINIFKGMFDSWIFLSVIIATAIFQVIIVEFLGAFASTVPLTWQFWLLSVLFGVLSMPLAAILKCIPVGSDPTKQHHDGYEALPSGPESV	1035

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre2g01990	1035	Pfam	E1-E2 ATPase	235	429	-	-
	Trre2g01990	1035	FunFam	Calcium-transporting ATPase	212	334	-	-
	Trre2g01990	1035	PRINTS	H+-transporting ATPase (proton pump) signature	752	768	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Trre2g01990	1035	PRINTS	H+-transporting ATPase (proton pump) signature	784	809	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Trre2g01990	1035	PRINTS	H+-transporting ATPase (proton pump) signature	609	627	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Trre2g01990	1035	Pfam	Cation transport ATPase (P-type)	505	591	-	-
	Trre2g01990	1035	Gene3D	-	17	78	-	-
	Trre2g01990	1035	Gene3D	-	770	1012	-	-
	Trre2g01990	1035	SFLD	p-type atpase	433	805	IPR044492	-
	Trre2g01990	1035	SFLD	C1.7: P-type atpase like	433	805	-	-

Showing 1 to 10 of 39 entries

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre2g01990	Trre-Chr2	16106929	16116097	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre2g01990	61	1032	Primary Pumps ATPases	AT3G57330	73.279	0.0	1481

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre2g01990	K01537		-	gmx:100791934	1677.92

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