Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01982 ATGAGGAAGAAAAGTATTCCATCTTGTTCTTTTCATAATCCATGTTCTTCTTTATATGGTTTAACAAGAATGTTTAAATGTGATTTGTGTGGCAAAAGCTTCAGCTCCGGCAATGCACTTGGTGGCCACAAAACTTCTCACCGCTCGCAAAACCTTCTTCGGTCACTAATCAAGAAACATTGTTGTCAATGTCAGGTTTGCATGAAGGTTTTTTCATCCGACAAGGCTTTGTATGGACACATGAGATCACACAAAAGAGATCAAAAGAATGTTATTCATCCACCACCACCAACTACATCCTCCTTAGACGACAATGAAGATCAATTTCTACTTAGGGAAATATGTTAA 348 0.3793 MRKKSIPSCSFHNPCSSLYGLTRMFKCDLCGKSFSSGNALGGHKTSHRSQNLLRSLIKKHCCQCQVCMKVFSSDKALYGHMRSHKRDQKNVIHPPPPTTSSLDDNEDQFLLREIC 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01982 115 Gene3D Classic Zinc Finger 22 84 - -
Trre2g01982 115 SMART c2h2final6 25 47 IPR013087 -
Trre2g01982 115 SMART c2h2final6 62 84 IPR013087 -
Trre2g01982 115 MobiDBLite consensus disorder prediction 82 106 - -
Trre2g01982 115 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 25 91 IPR044303 GO:0006355
Trre2g01982 115 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 89 IPR013087 -
Trre2g01982 115 Pfam C2H2-type zinc finger 64 86 - -
Trre2g01982 115 Pfam C2H2-type zinc finger 25 50 - -
Trre2g01982 115 ProSitePatterns Zinc finger C2H2 type domain signature. 62 84 IPR013087 -
Trre2g01982 115 SUPERFAMILY beta-beta-alpha zinc fingers 23 84 IPR036236 -
Trre2g01982 115 ProSitePatterns Zinc finger C2H2 type domain signature. 27 47 IPR013087 -
Trre2g01982 115 ProSiteProfiles Zinc finger C2H2 type domain profile. 25 52 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01982 Trre-Chr2 16080592 16080939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01982 25 84 C2H2 Transcription Factor Family AT3G60580 36.486 6.23e-11 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g01982 zf-C2H2_6 1.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01982 - - tpra:123891323 137.887