Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01976 ATGGATTACACTAACAATTCCAATCACTCCCTTTCCTACTCCACTCTCTTCAATCTTCAGTCTTTGGTGAATTTTCAACTTCCACAACAAGATGATGAATTTGATTATTACGGCAATAGTAGTCAGGACGAAGAAGAAAGCAGAGATAGTCGTCGAGGTGGTGGGGGAGCAATTGGAAATCACAGTAACGGGAATGTGCATTCAAAGGATGTGAATTTGTCGAAAAATAAAAGGGTGCGATCTCAAAACAGCGATGACGAGGACAGAGGAAGTTTTTATGGGGCATACATGACAGAGGAGAAATACCGCTCAATGTTGGGTGACCATGTTCAGAAATACAAGAGGAGGTCTAAGGATATTGCTTCTAGTCATGCACAAAATCGGGGTGCTGTCCCGCTTGTCAAAAGTAATAATAATGGATTAAAAGCTCAGAAGCTAGGGAATGATAACCGGGGAGGATTGCATGCTGCTGAGACTTTATCTGAATGGTTATATAATTCCAATTCTCAGAAACAAGAAAACTACCATAATGCAGATTTAGTGCAGAGAAGAAATGGCGCTGATAGGGTTATGTATGAACCTTCTATTTTAGAAATTGGGGATGGTATCACATACAAGATTCTTCCAATTTATGACAAGCTGGCTACAACGCTGAACCTTCCAAGCTTCTCAGATATCCATGTGGATGAATTTTACTTGAAGGGTACCTTGGATTTGGGGTCTTTGGCTGCAATGATGGCTGCTGACAAAAGGTTAGGAAATAAAATCCGAGCAGGCATGGGGGAACCCCTATTTCAATATCAATCACTTCAGGAGCGAATAAAGGCCATGTCAGCTTCTAATTCACCTCAAAAATTTAGTTTGAATGTGTCTGATATTGGTTTGAATTCATCCATTCCGGAGGGGGCTGCTGGAAACATAAAGCGGTCTATTTTGTCCGAGGGTGGTGTATTGCAGGTTTATTATGTAAAGGTTTTGGAAAAAGGTGACACTTACGAGATCATTGAGCGAAGCCTACCCAAGAAGCAAAAGGTAAAGAAAGATCCTGCTTCAATTGAGAAGGAGGAAATGGATAGAATTGGAAAGATTTGGGTAAACATTGTAAGAAGAGACATACCAAAGCATCATAGGAATTTTACTACTCTTCATCGTAAGCAACTCATTGATGCCAAGAGGTGCTCAGAGTACTGTCAAAGAGAGGTTAGATTGAAAATTAGTAGATCACTTAAATGGAATAGGAGTGCTAGCATTCGCACCCGGAAACTATCTAGAGACATGTTGCTGTTCTGGAAACGAATAGATAAGGAGATGGCCGAAGTGAGGAAAAGAGAAGAGAAAGAAGCCGCTGAAGCTTTAAGACGTGAACAGGAGCTCCGAGAGGCAAAGAGACAGCAGCAAAGGCTTAATTTTCTGATACAACAAACTGAGATCTACAGTCATTTTATGCAGAACAAGTCAGATTTACTATCTTCGGAAGCTTTACCCGTGGCAGAGGAAAAAACAAATGATCAAGATGCACCGTTCATCTCATCAGATGCTGGGCCTAACGAGGAAGAAGATCCAGAAGAGGCTGAATTGAAGAAAGAAGCTTTGAAGGCTGCTCAAGAAGCAGTCTTTAAGCAGAAAAAGTTGACTAATGCTTTTGACAGTGAATGTTTGAGGCTGCGGCAGGTGGGTGAAGCTGATCCACTTATGCAGGAAGTTGCAGGAGCGAGTAACATTGATTTGCAAACCCCATCAACCATGCCAGTGGCATCCACAGTTCAAACACCTGAATTATTTAAAGGTTGTCTAAAAGAATACCAGCTGAAAGGTCTCCAATGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATACTTGCTGATGAGATGGGACTTGGAAAGACCATACAAGCTATGGTTTTTTTAGCCCATTTAGCTGAGGAAAAAAACATATGGGGACCTTTTCTGGTTGTTGCACCTGCTTCTGTATTGAACAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGAACTTAAAAGACTTCCGTATTGGGGAGGGCTTTCAGAGAGGACAGTACTAAGGAAAAGTATTAACCCAAAGGACCTTTATCGTAGGGAAGCTAAATTTCACGTTCTCATCACAAGCTATCAGCTATTAGTATCCGATGAGAAGTATTTTCGTCGCGTGAAATGGCAGTATATGGTTTTAGACGAAGCCCAGGCAATTAAAAGTGCAAACAGTATAAGATGGAAGACACTTCTCAGCTTTAATTGCCGGAATCGTCTTCTGCTGACTGGTACACCCATTCAGAATAATATGGCAGAGTTGTGGGCTCTTCTGCACTTCATCATGCCAACTTTATTTGACAGCCACGAGCAGTTTAACGAGTGGTTCTCAAAAGGAATTGAGAACCATGCAGAACACGGGGGTACTTTGAATGAGCACCAGCTTAATAGATTGCACTCAATTCTAAAACCTTTCATGCTACGGCGTGTTAAAAAAGACGTAGTTTCTGAGTTGACACAAAAAACCGAGGTTATGGTGCATTGCAAGTTGAGTTCTCGGCAGCAGGCTTTTTACCAAGCAATTAAGAACAAGATATCTCTGGCTGAACTATTTGATAGTAATCGTGGGCAGCTTAACGAGAAGAAAATTCTAAATTTGATGAATATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCTGAGTTGTTCGAAAGGAATGAAGGAAGCACATATTTTTACTTTGGTGAGATTCCAAATTCCCTTCCACCTCCTCCATTTGGTGAGTTGGAGGATGTTTACTATGCTGGAGGTCTCAACCCCTTATCTTTTCAGATACCAAAGCTTGTCTATCAGGATATTATGCAAAGCTCTGAGACTCTCAGTTCAGCTGTTGGTCGTGGTGTCTCTAGAGAAACTTTTCAGAAACATTTTAATATTTTTCAACCAGAAAATGTCCATCGATCTATTTTCTCAGAAGAAACAAATGTTGAAAGTGGAAACTTTGGTTTTACCCATTTGATGGATTTGTCTCCGCAAGAGGTGGCATTTTTGGCCACTGGTTCTTTCATGGAGCGACTATTATTTTCTATGATGAGATGGGAACAAAATGTCTTTGACGAAGTTGGAGACTTTTTTACAGAATACATTGTAGATGATCCTGAATGTAATTTCCTCGAAAAAGGTAAAGTGAGAGCTGTTACAAGAATGTTATTGCTACCATCCAGATCTGAGACCAAGTTTCTTCAAAAAAGGTTTGCAACCGGGCCCTCCCATGCCCCTTTTGAGGGCTTGGTAGTCTCGCATCAGGATAGGCTTTTATCTAACGCAAGGCTTCTTCACTCAGCATACACATACATCCCACCAACAAGAGCTCCCCCTATTGATGCTCATTGCTCTGATAGAAACTTCTCCTACAAAAAGATTGAAGAATTACATGATCCTTGGGTTAAGAGGTTTTTTGTTGGATTTGCACGTACATCTGAATGTAATGGGCCTAGAAAGCCCAATCCCCATCATCCTCATTATTTAATTCAAGAGATCGATTCTGAATTACCTGTTTCACAGCCTGCGCTGCAGTTAACTCACAGTATTTTTGGCTCCACACCACCTATGCGGAATTTTGACCCAGCAAAGTTGCTCACTGACTCTGGGAAACTTCAAACTCTTGATATATTACTGAAACGCTTACGCGCAGGAAATCATCGTATTCTTTTGTTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTACAGAAAATACAAGTATTTTAGACTTGATGGGTCATCTACAATTCAGGATCGCAGAGACATGGTCAAAGACTTCCAACAAAGGAGTGATATTTTTGTGTTCTTGCTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACGGTCATATTTTATGAGAGTGATTGGAATCCGACATTGGATCTTCAAGCAATGGATAGAGCTCATCGTTTGGGTCAGACGAGAGATGTTACAGTTTATCGACTTATATGTAAAGAGACTGTTGAAGAGAAGATTCTTCTTAGAGCAAGTCAAAAAAGTACCGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGCGGTGATCTTTTAGCTCCCGAGGATGTTGTATCTTTGCTTTTGGATGATGTCCAATTGCAACAAAAATTTAAGGAAATCCCTCTCCAGGTAAAGGATAGGCAAAAGAGAAAACAATCTATGAAGGGCATTCGAGTAAGCGAAGATGGTGATGCATCTCTGGAAGATTTGACAAACTCTGTAGCTCAGAGTATTGAAGATAATGATGCTTTTGTGGATCCCGAGGGGATAAAGTCCAGTAATAAAAAGAGAAAAGCAACTTCAGACAAGCAAACTTCAAGATCAAAGAATTCTAAAAAGATGGGTGAACTTGGCAATATGCCTATAGATGAAACGGATGATGCCCATCTAAATAATGATTCAGCGGGCCAGAAACCAAAGAGACCAAAGACAAAGAAGAATATAAATGAAAAGCTTGAAGAAGTTTATACTGGGACAGCCACCATTTTACCAGAGCAGACCCAATATGATTTCAGTTTTGGAGGTTCTAAAGCAGAGACAATTCAAGACTTATGA 4617 0.407 MDYTNNSNHSLSYSTLFNLQSLVNFQLPQQDDEFDYYGNSSQDEEESRDSRRGGGGAIGNHSNGNVHSKDVNLSKNKRVRSQNSDDEDRGSFYGAYMTEEKYRSMLGDHVQKYKRRSKDIASSHAQNRGAVPLVKSNNNGLKAQKLGNDNRGGLHAAETLSEWLYNSNSQKQENYHNADLVQRRNGADRVMYEPSILEIGDGITYKILPIYDKLATTLNLPSFSDIHVDEFYLKGTLDLGSLAAMMAADKRLGNKIRAGMGEPLFQYQSLQERIKAMSASNSPQKFSLNVSDIGLNSSIPEGAAGNIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPASIEKEEMDRIGKIWVNIVRRDIPKHHRNFTTLHRKQLIDAKRCSEYCQREVRLKISRSLKWNRSASIRTRKLSRDMLLFWKRIDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTEIYSHFMQNKSDLLSSEALPVAEEKTNDQDAPFISSDAGPNEEEDPEEAELKKEALKAAQEAVFKQKKLTNAFDSECLRLRQVGEADPLMQEVAGASNIDLQTPSTMPVASTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYRREAKFHVLITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTQKTEVMVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKKILNLMNIVIQLRKVCNHPELFERNEGSTYFYFGEIPNSLPPPPFGELEDVYYAGGLNPLSFQIPKLVYQDIMQSSETLSSAVGRGVSRETFQKHFNIFQPENVHRSIFSEETNVESGNFGFTHLMDLSPQEVAFLATGSFMERLLFSMMRWEQNVFDEVGDFFTEYIVDDPECNFLEKGKVRAVTRMLLLPSRSETKFLQKRFATGPSHAPFEGLVVSHQDRLLSNARLLHSAYTYIPPTRAPPIDAHCSDRNFSYKKIEELHDPWVKRFFVGFARTSECNGPRKPNPHHPHYLIQEIDSELPVSQPALQLTHSIFGSTPPMRNFDPAKLLTDSGKLQTLDILLKRLRAGNHRILLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVKDFQQRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTRDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKFKEIPLQVKDRQKRKQSMKGIRVSEDGDASLEDLTNSVAQSIEDNDAFVDPEGIKSSNKKRKATSDKQTSRSKNSKKMGELGNMPIDETDDAHLNNDSAGQKPKRPKTKKNINEKLEEVYTGTATILPEQTQYDFSFGGSKAETIQDL 1538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01976 1538 MobiDBLite consensus disorder prediction 497 524 - -
Trre2g01976 1538 Pfam SNF2-related domain 613 900 IPR000330 GO:0005524|GO:0140658
Trre2g01976 1538 SMART ultradead3 594 789 IPR014001 -
Trre2g01976 1538 Gene3D - 1183 1430 IPR027417 -
Trre2g01976 1538 PANTHER HELICASE SRCAP-RELATED 40 541 - -
Trre2g01976 1538 MobiDBLite consensus disorder prediction 71 87 - -
Trre2g01976 1538 Gene3D - 836 905 IPR027417 -
Trre2g01976 1538 SMART helicmild6 1244 1327 IPR001650 -
Trre2g01976 1538 Coils Coil 435 474 - -
Trre2g01976 1538 Pfam Helicase conserved C-terminal domain 1218 1327 IPR001650 -
Trre2g01976 1538 FunFam Putative DNA helicase INO80 570 848 - -
Trre2g01976 1538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 828 1397 IPR027417 -
Trre2g01976 1538 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 610 781 IPR014001 -
Trre2g01976 1538 CDD SF2_C_SNF 1206 1338 - -
Trre2g01976 1538 MobiDBLite consensus disorder prediction 1473 1494 - -
Trre2g01976 1538 FunFam DNA helicase INO80-like protein 1186 1438 - -
Trre2g01976 1538 Pfam DNA-binding domain 359 486 IPR020838 GO:0003677
Trre2g01976 1538 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1218 1402 IPR001650 -
Trre2g01976 1538 MobiDBLite consensus disorder prediction 1438 1464 - -
Trre2g01976 1538 MobiDBLite consensus disorder prediction 129 145 - -
Trre2g01976 1538 MobiDBLite consensus disorder prediction 1399 1418 - -
Trre2g01976 1538 Gene3D - 593 835 IPR038718 -
Trre2g01976 1538 MobiDBLite consensus disorder prediction 1432 1503 - -
Trre2g01976 1538 MobiDBLite consensus disorder prediction 115 151 - -
Trre2g01976 1538 MobiDBLite consensus disorder prediction 33 92 - -
Trre2g01976 1538 ProSiteProfiles DBINO domain profile. 363 488 IPR020838 GO:0003677
Trre2g01976 1538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 581 826 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01976 Trre-Chr2 16030368 16041778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01976 619 900 RAD5 or RAD16-like Gene Family AT5G43530 29.664 6.30e-26 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre2g01976 SNF2_N 8.6e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01976 K11665 - gmx:100780615 2409.41