Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01975 ATGGAGAAAGATAACGACTATACGACACCAAGTTTCAACACACTTGACTACACACAAGATCATCATCATAACCAACAACAATATGAACAACTTATGAAGTATCGAGTTGGCGAAACTTCAGGCGAAAACAACGGGATGGTGGTGGATAATTACATGCCTCAAACACAAACTTCAGGAGGTTTTTATGGTGCAAATAATTCTTTTGATAAAATGAGTTTTGCAGATGTGATGCAATTTGCAGCCTTAAACCGGGAAGAATCTGATCCGGTATATTTCATGAAGTTTCCTGTCTTAAACAACAAGATGGAAAATCAAAACTTGATTTTGAGTGGTGGTGATGGGATAGGAGAAAATGAATCAAGAGATGATCATCAACAAGATCAGTACGAAGAAATTAATCGAGTTTCTGAGGAGAACAACAACGTCTCGGTGCAAGTAGTACAAGAAAATAATAAGAAGAGGAAGAGACCAAGAAGTGTTAAGACAACTGAAGAAGTTGAGAGTCAAAGAATGACTCACATCGCAGTTGAAAGGAATCGAAGGAAGCAAATGAATGAGCATCTTCGTGTTCTTAGATCCCTCATGCCTGGTTCATACGTCCAAAGGGGTGATCAAGCTTCTATAATTGGGGGAGCTATAGAGTTTGTGAGAGAATTGGAACAACTTCTTCAATGTTTAGAATCACAAAAGAGAAGGAGATTACTAGGAGAAGCACAATCAAAACAAGCTGAAGATTCAACACCATTTTTTCAACCTACTAATTTGGCAACAAATGAACAAATGAAGCTAGTTGAAATAGAAACTGGACTTCAAGAAGAAACAGCTGAGAGTAAGTCATGTTTGGCTGATGTAGAAGTGAAGCTTCTTGGATTTGATGCAATGATTAAAATCCTATCAAAGAGAAGGCAAGGACAGTTGATAAAGATCATTGCTGCTCTTGAAGATATGCAACTTATTATCCTTCACACTAACATCACCACCATTGAACAAACAGTTCTTTATTCATTCAATGTCAAGGTAGCTAGTGATACAAGGTTCACAGCAGAAGATATAGCAAGCTCCGTTCAGCAGATACTAAGTTTTATTCATGCAAACACCAGCGTATGA 1107 0.3767 MEKDNDYTTPSFNTLDYTQDHHHNQQQYEQLMKYRVGETSGENNGMVVDNYMPQTQTSGGFYGANNSFDKMSFADVMQFAALNREESDPVYFMKFPVLNNKMENQNLILSGGDGIGENESRDDHQQDQYEEINRVSEENNNVSVQVVQENNKKRKRPRSVKTTEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQSKQAEDSTPFFQPTNLATNEQMKLVEIETGLQEETAESKSCLADVEVKLLGFDAMIKILSKRRQGQLIKIIAALEDMQLIILHTNITTIEQTVLYSFNVKVASDTRFTAEDIASSVQQILSFIHANTSV 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01975 368 MobiDBLite consensus disorder prediction 7 21 - -
Trre2g01975 368 Gene3D - 159 234 IPR036638 GO:0046983
Trre2g01975 368 CDD bHLH_AtFAMA_like 171 238 - -
Trre2g01975 368 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 219 IPR011598 GO:0046983
Trre2g01975 368 MobiDBLite consensus disorder prediction 148 170 - -
Trre2g01975 368 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 234 IPR036638 GO:0046983
Trre2g01975 368 MobiDBLite consensus disorder prediction 1 23 - -
Trre2g01975 368 SMART finulus 174 225 IPR011598 GO:0046983
Trre2g01975 368 Pfam Helix-loop-helix DNA-binding domain 169 220 IPR011598 GO:0046983
Trre2g01975 368 PANTHER TRANSCRIPTION FACTOR FAMA 88 359 IPR044283 GO:0003700|GO:0010052
Trre2g01975 368 MobiDBLite consensus disorder prediction 149 170 - -
Trre2g01975 368 FunFam Basic helix-loop-helix transcription factor 159 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01975 Trre-Chr2 16022266 16024064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01975 62 368 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 60.795 3.56e-125 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre2g01975 HLH 7.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01975 K26213 - gmx:100813515 447.203