Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01940 ATGTCCCTTGAAGAGACTCTAAGATCTATCTCCCTTGATTATCTAAACCTTCTAATCAATGGCCAAGCTTTTAGTGACGTCACTTTTCAAGTTGAAGGTCGTTTGGTTCATGCTCATAGATGCATCTTAGCAGCAAGGAGTCTTTTTTTCAGGAAATTCTTTTGTGGGCCAGACCCACCATCGGGATTAGACCCAACAGGAGGAGGAACATCTCGTCAACCAACAGTTAGACCTGGTGTTATTCCGGTGAACTCTGTCGGTTACGAGGTGTTTCTGCTCCTGTTGCAGTTTTTGTACAGTGGTCAAGTTTCTATTGTTCCTCAGAAACATGAACCTAGAGCTAATTGTGGTGAGAGAGGTTGTTGGCATACGCATTGTACCTCAGCCGTTGATCTTGCCCTTGATACTCTTGCTGCTGCTAGATACTTTGGCGTTGAACAACTTGCATTGCTCACTCAGAAGCAACTAGTGATCATGGTGGAAAAAGCCTCAATAGATGATGTGATGAAAGTACTAATAGCTTCAAGAAAGCAAGAAATGCACCAACTTTGGACAACATGTTCCCAACTTGTTGCAAAGTCAGGTCTCCCACCTGAAATCCTAGCTAAACATCTCCCCATCGATGTAGTCGCCAAAATCGAAGAGCTTCGTCTCAAAACCTCCTTAGCACGCCGCTCCTTAATGCCACTCCATCATCATCATCACCATCACCACCATGATCTCGGTGACCTTGAAGATCAGAAAATCCGCCGAATGAGGCGGGCCCTTGATTCCTCTGATGTCGAACTAGTTAAACTCATGGTCATGGGAGAAGGCCTAAACCTCGATGAAGCATTGGCGTTACACTATGCAGTTGAAAATTGCAGCAGAGAAGTGGTTAAAGCCTTGCTCGAACTCGGTGCTGCCGATGTTAACTATCCGGCTGGTCCTGCTGGGAAAACACCGCTTCATGTGGCTGCGGAAATGGTTTCACCGGAAATGGTAGCGGTTTTACTTGACCACCATGCAGATCCGACAATTAGAACCGTTGATGGTGTAACAGCTTTGGATATACTCAGAACCCTAACCTCTGATTTTCTATTCAAAGGTGCTGTTCCTGGATTAACTCACATTGAACCAAACAAGTTAAGATTGTGCTTAGAACTTGTTCAATCCGCGGCTCTTGTTCTTTCGCGTGAAGAAAACAACGCGAATAACAACAACAATAATGCTTCTTCATCAGCAGCACCAATTTATCCTCCAATGAGTGAAGATCATAGTAGTAGCAGCAGTGGTAACAACAACAATAACAACAACAACAACAACATTGGTAACCTTAACTTGGATTCAAGATTGGTATACCTCAACCTTGGTGCTACTCATATGGGTGGTGATGATGATAGTGGACACAATAGTCATCATCATAGGGAAGCCGTGAATCGTCAAGGTGGTCATGGATGTGACCCAACAATGTATCATCACTCTCATGACTACTAA 1476 0.4417 MSLEETLRSISLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPTGGGTSRQPTVRPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRANCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLVIMVEKASIDDVMKVLIASRKQEMHQLWTTCSQLVAKSGLPPEILAKHLPIDVVAKIEELRLKTSLARRSLMPLHHHHHHHHHDLGDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHVAAEMVSPEMVAVLLDHHADPTIRTVDGVTALDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREENNANNNNNNASSSAAPIYPPMSEDHSSSSSGNNNNNNNNNNIGNLNLDSRLVYLNLGATHMGGDDDSGHNSHHHREAVNRQGGHGCDPTMYHHSHDY 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01940 491 MobiDBLite consensus disorder prediction 459 475 - -
Trre2g01940 491 CDD BTB_POZ_NPR_plant 8 160 - -
Trre2g01940 491 FunFam regulatory protein NPR5 isoform X2 242 359 - -
Trre2g01940 491 Pfam Ankyrin repeats (3 copies) 259 341 IPR002110 GO:0005515
Trre2g01940 491 ProSiteProfiles Ankyrin repeat profile. 311 343 IPR002110 GO:0005515
Trre2g01940 491 MobiDBLite consensus disorder prediction 456 482 - -
Trre2g01940 491 Gene3D Potassium Channel Kv1.1; Chain A 4 193 IPR011333 -
Trre2g01940 491 ProSiteProfiles Ankyrin repeat region circular profile. 311 337 - -
Trre2g01940 491 Pfam BTB/POZ domain 16 109 IPR000210 GO:0005515
Trre2g01940 491 SUPERFAMILY Ankyrin repeat 270 354 IPR036770 -
Trre2g01940 491 Gene3D - 244 359 IPR036770 -
Trre2g01940 491 MobiDBLite consensus disorder prediction 396 437 - -
Trre2g01940 491 ProSiteProfiles BTB domain profile. 25 107 IPR000210 GO:0005515
Trre2g01940 491 Pfam Domain of unknown function (DUF3420) 195 253 IPR024228 -
Trre2g01940 491 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 490 IPR044284 GO:0099402
Trre2g01940 491 FunFam regulatory protein NPR5 isoform X1 4 193 - -
Trre2g01940 491 SMART ANK_2a 311 340 IPR002110 GO:0005515
Trre2g01940 491 SMART ANK_2a 276 306 IPR002110 GO:0005515
Trre2g01940 491 SMART BTB_4 25 160 IPR000210 GO:0005515
Trre2g01940 491 SUPERFAMILY POZ domain 10 156 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01940 Trre-Chr2 15835698 15839333 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre2g01940 BTB 2.5e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01940 K14508 - qsu:112012060 773.467