Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01923 ATGGCAAAGAGCAAGAGCTGGTTTGGATGGGTGAAAAGCCTTTTCATTTCTGAGTTAAAGGACAAAAAGCAAAGGAAATGGGCATGGAGATTAGGAAGGATTAAACAGAAGCAATACCCTTCAATTACAGCTTCAAATAAGACATTAATTGAAGAAGCAAGTGCAGAGCAAAGAAAACATGCTTTAGCTGTGGCTATTGCAACAGCTTCTGCTGCAGAGGCTGCAATTGCTGCTGCACATGCTGCTGCTGAGGTTGTCAAGCTCACAGATGGCACGTCTCGTTCGTATTCATATCTCTCGAAGGGAGACAGAAGTTTTGCTGCCATTAAGATTCAAAGCGCTTACCGCGCACATCTTGCTAGGAAAGCATTAAGAGCATTGAAGGGAGTTATCAGACTACAGGCCATAATTCGCGGAGAAGCAGTTAGGCGTCAAGTGTCGAGAACATCAAAGAATGTTCCCTCTTATGCAAAAAATCGGAAGGAAATCCAGGAAAGAAGCAGCCATACTGACGAAGAAAACTACAAACATTACCATGTAAAACAGTTTCCAAAGCAAAAGAAAAGCACAGAAGAGAATGAACTTAAGGGAAGGTCTGCATTGAATTTGAGGAGTCCTCATGTCAAATCCACTCAAACAAATTTGCAGCTTGAATGTGATAGTCAGAGAACGTGGAATTATAGCTCTTACTCAAGAGAAGACATTGAAGCCATATGGTTAAGAAAGCAAGAAGCTATTTTTAAAAGAGACAGGATGAGGCAATACTCTTCTTCACAAAAGGAGAGAAGATTTTCCCAAAGGGTGGAAGAATCTCTGCAGGACAAAGAATTTGGAGGAGATAGTTGTCATACTCTTGGAGAGTGGCTACAAAAAGAAACATGTAACTGGAATGATCCTTCAAATATCACAATAAGAAATGAAGTGCAAGAAGGATTAAGATCACAAATTTCAGTCCAAAGAAAATCATTTTCTCATGTGAAAAAAAGTTCATTTGGAGATGAGTGTTCCATGCCAAATTCTCCAGTTTTTCCTAAATACATGGCTGTCACTGAATCTAGTAAAGCAAAAGTAAGGTCTATGAGCACACCAAGGCTAAGAACATGA 1104 0.3995 MAKSKSWFGWVKSLFISELKDKKQRKWAWRLGRIKQKQYPSITASNKTLIEEASAEQRKHALAVAIATASAAEAAIAAAHAAAEVVKLTDGTSRSYSYLSKGDRSFAAIKIQSAYRAHLARKALRALKGVIRLQAIIRGEAVRRQVSRTSKNVPSYAKNRKEIQERSSHTDEENYKHYHVKQFPKQKKSTEENELKGRSALNLRSPHVKSTQTNLQLECDSQRTWNYSSYSREDIEAIWLRKQEAIFKRDRMRQYSSSQKERRFSQRVEESLQDKEFGGDSCHTLGEWLQKETCNWNDPSNITIRNEVQEGLRSQISVQRKSFSHVKKSSFGDECSMPNSPVFPKYMAVTESSKAKVRSMSTPRLRT 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01923 367 ProSiteProfiles IQ motif profile. 128 155 IPR000048 GO:0005515
Trre2g01923 367 ProSiteProfiles IQ motif profile. 104 132 IPR000048 GO:0005515
Trre2g01923 367 MobiDBLite consensus disorder prediction 147 197 - -
Trre2g01923 367 Pfam IQ calmodulin-binding motif 107 125 IPR000048 GO:0005515
Trre2g01923 367 Gene3D - 104 153 - -
Trre2g01923 367 Pfam Protein of unknown function (DUF4005) 338 366 IPR025064 -
Trre2g01923 367 MobiDBLite consensus disorder prediction 158 197 - -
Trre2g01923 367 PANTHER IQ-DOMAIN 5-RELATED 4 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01923 Trre-Chr2 15684045 15686190 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01923 1 367 IQD Protein Family AT5G03960 41.146 6.77e-60 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01923 - - gmx:100800767 397.512