Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01918 ATGGCGCAGAGTAATTGGGAAGCGGATAAGATGCTTGATGTTTACATATATGATTATTTGATGAAGAAAAAATTGCACAATACCGCCAAGTCATTTATGACAGAAGGGAAGGTTTCTCCGGATCCAGTAGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATTGCAAGGACAAATGAGAAACATTCTGAGAATGCTGCAGCATATTTAGAGGCTCAACAGATTAAAGCGAAAGAACAACAATTGCAAATGCAACAATTGCAATTAATGCGTCATGCTCAGCTGCAAAAAAGAGATCCTAATCATCCTCCCATTGGAAGTCCTCTAAATGCTATCACCACAGAAGGAGTCCTAGGGCAATCTACTGCCACTGCTTTGGCTGCAAAAATGTATGAGGATCGGATGAAGAGCTCTAATCCTATGGATACAGAGACATCCCAACCACTTTTAGATGCTAGAATGGCCCTTTTGAAATCAACAAATCATCCCGGTCAGATGGTTCAAGCAAATTCAGGAAGTGTGACAGCTTTGCAGCAAATGCAGGCTCGAACTCAGCAAATCCCGGATATCAAAAGCGAAGTCAACATGGGAAACATGCAAAGATCCTTACCTATGGATCCTTCTTCCATTTATGGGCAGGGAGGAATGCAGTCAAAGTCTGGAATCACAAATGCAGGATTAAATCAGGGAGTTGGTGGTCTTACATTAAAAGGATGGCCTTTAACTGGCATAGAACAAATTCGCCCGGGTTTTGGAGCTCAAGTTCAAAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTGCCACAACAACAACAGCAGCAGCTCCTTGCCCAGGCACATGCACAAGGAAATATCGGCAATTCACAAGTGTATGGAGATATGGATCCACAGCGATTAAGGGGATTAGCTAGGGGAGGTTTGAATATGAAAGACAGTCAACCAATTGCAAATGATGGGCCAGTAGGCTCTCCAATGCAATCTACTTCATCTAAGATCAACATGCCACAGATGCAACAATCCATCTCCCAGCAACAACAGGATCCTTTGCATCCACAGCAAATGGTTCAGAATAACCGAAAAAGGAAAGGGCCTACATCTTCAGGAGCTGCCAATAGTACTGGTACAGGAAATACACACGGCCCTTCTAATTCTCAACCATCAACTCCATCTACTCATACTCCTGGTGATGGGGTTGCTATGGTGGGTAACTTGCAGAATGTCGCTGCTGTATCCAAAGGTTTGATGATGTATGGTACTGAAGGAGCAGGCGGTCTTGCATCTTCCACAAACCAGCTGTTGCAGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAATCATTTCTCTCACAAGATGATGGTGATGGAAAGGACTTATTTGGGACGTTGAAACGGAACCCTTCCGAGCATGCTACAGATGCTTCAAAAGCCTTTTCCTTCAGTGAAGTTAGTTCTATACGCAAAAGCAATGGAAAAGTTGTTTGCTGTCATTTCTCATCAGATGGGAAATTATTAGCCAGTGCTGGACATGACAAGAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACACAGAGCACACCAGAGGAACACACTGCTATTATTACCGACGTTCGCTTCAGACCAAATTCAACTCAGCTGGCAACGTCTTCGTTTGATACAACTGTTCGGCTTTGGGATGCTGCAGATCCAAGCTTTTCTTTGCAGGCATATAGTGGTCATACTTCACATGTTGCATCCCTTGATTTCCACCCTAAGAAAAATGACATTTTCTGCTCATGTGATGATAACAATGAGATTCGCTTATGGAATATTAGTCAATATTCTTGTACTCGCGTTTTTAAGGGAGGATCTACACAGGTGAGGTTTCAGCCGAGGAGTGGACACCTTCTGGCTGCAGCATCCAGCAATGTTGTGTCTGTCTTTGATGTTGAGACTGACAGGCAAATGCACTCATTACAGGGACACTCTGCGGAGGTACATTGTGTATGCTGGGATACAAATGGAGATTATTTGGCATCTGTGAGTCAAGAATCTGTTAAAGTTTGGTCACTTGCTTCTGGTGATTGCATTCATGAACTTAATTCCAGTGGAAACATGTTTCAATCTTGTGTTTTTCACCCAAGCTACTCTAACCTCTTGGTTATTGGAGGATACCAGTCACTGGAGCTATGGAACATGGCTGAAAATAAATGTATGACCATACCAGCTCATGAGGGTGTAATATCAGCTCTAGCACAATCACCAGTGACAGGGATGGTTGCTTCTGCCAGCCATGACAAGTCTGTAAAGATATGGAAATAA 2352 0.432 MAQSNWEADKMLDVYIYDYLMKKKLHNTAKSFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSENAAAYLEAQQIKAKEQQLQMQQLQLMRHAQLQKRDPNHPPIGSPLNAITTEGVLGQSTATALAAKMYEDRMKSSNPMDTETSQPLLDARMALLKSTNHPGQMVQANSGSVTALQQMQARTQQIPDIKSEVNMGNMQRSLPMDPSSIYGQGGMQSKSGITNAGLNQGVGGLTLKGWPLTGIEQIRPGFGAQVQKPLLQSANQFQLLPQQQQQQLLAQAHAQGNIGNSQVYGDMDPQRLRGLARGGLNMKDSQPIANDGPVGSPMQSTSSKINMPQMQQSISQQQQDPLHPQQMVQNNRKRKGPTSSGAANSTGTGNTHGPSNSQPSTPSTHTPGDGVAMVGNLQNVAAVSKGLMMYGTEGAGGLASSTNQLLQDDMEHFGDVGSLDDNVESFLSQDDGDGKDLFGTLKRNPSEHATDASKAFSFSEVSSIRKSNGKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTQSTPEEHTAIITDVRFRPNSTQLATSSFDTTVRLWDAADPSFSLQAYSGHTSHVASLDFHPKKNDIFCSCDDNNEIRLWNISQYSCTRVFKGGSTQVRFQPRSGHLLAAASSNVVSVFDVETDRQMHSLQGHSAEVHCVCWDTNGDYLASVSQESVKVWSLASGDCIHELNSSGNMFQSCVFHPSYSNLLVIGGYQSLELWNMAENKCMTIPAHEGVISALAQSPVTGMVASASHDKSVKIWK 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01918 783 MobiDBLite consensus disorder prediction 330 405 - -
Trre2g01918 783 MobiDBLite consensus disorder prediction 318 410 - -
Trre2g01918 783 Gene3D - 635 783 IPR015943 GO:0005515
Trre2g01918 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 669 709 IPR001680 GO:0005515
Trre2g01918 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 544 576 IPR001680 GO:0005515
Trre2g01918 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 502 543 IPR001680 GO:0005515
Trre2g01918 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 587 629 IPR001680 GO:0005515
Trre2g01918 783 ProSitePatterns Trp-Asp (WD) repeats signature. 521 535 IPR019775 -
Trre2g01918 783 SMART WD40_4 744 783 IPR001680 GO:0005515
Trre2g01918 783 SMART WD40_4 537 576 IPR001680 GO:0005515
Trre2g01918 783 SMART WD40_4 495 534 IPR001680 GO:0005515
Trre2g01918 783 SMART WD40_4 703 742 IPR001680 GO:0005515
Trre2g01918 783 SMART WD40_4 662 700 IPR001680 GO:0005515
Trre2g01918 783 SMART WD40_4 623 659 IPR001680 GO:0005515
Trre2g01918 783 SMART WD40_4 580 620 IPR001680 GO:0005515
Trre2g01918 783 Gene3D - 480 634 IPR015943 GO:0005515
Trre2g01918 783 CDD WD40 498 783 - -
Trre2g01918 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 751 783 - -
Trre2g01918 783 Coils Coil 79 99 - -
Trre2g01918 783 PRINTS G protein beta WD-40 repeat signature 521 535 IPR020472 -
Trre2g01918 783 PRINTS G protein beta WD-40 repeat signature 770 783 IPR020472 -
Trre2g01918 783 PRINTS G protein beta WD-40 repeat signature 563 577 IPR020472 -
Trre2g01918 783 Pfam WD domain, G-beta repeat 584 620 IPR001680 GO:0005515
Trre2g01918 783 Pfam WD domain, G-beta repeat 665 700 IPR001680 GO:0005515
Trre2g01918 783 Pfam WD domain, G-beta repeat 507 534 IPR001680 GO:0005515
Trre2g01918 783 Pfam WD domain, G-beta repeat 539 576 IPR001680 GO:0005515
Trre2g01918 783 Pfam WD domain, G-beta repeat 750 783 IPR001680 GO:0005515
Trre2g01918 783 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 783 IPR044716 GO:0003714
Trre2g01918 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 544 576 - -
Trre2g01918 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 502 537 - -
Trre2g01918 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 751 783 IPR001680 GO:0005515
Trre2g01918 783 SMART Lish 8 40 IPR006594 GO:0005515
Trre2g01918 783 Pfam LisH 10 36 IPR006594 GO:0005515
Trre2g01918 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 587 622 - -
Trre2g01918 783 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Trre2g01918 783 SUPERFAMILY WD40 repeat-like 495 783 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01918 Trre-Chr2 15646260 15657519 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01918 496 701 U-box Gene Family AT2G33340 26.852 1.24e-15 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Trre2g01918 WD40 0.0086 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01918 - - var:108326218 1353.96