Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01916 ATGGCGCAGAGTAATTGGGAAGCGGATAAGATGCTTGATGTTTACATATATGATTATTTGATGAAGAAAAAATTGCACAATACCGCCAAGTCATTTATGACAGAAGGGAAGGTTTCTCCGGATCCAGTAGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATTGCAAGGACAAATGAGAAACATTCTGAGAATGCTGCAGCATATTTAGAGGCTCAACAGATTAAAGCGAAAGAACAACAATTGCAAATGCAACAATTGCAATTAATGCGTCATGCTCAGCTGCAAAAAAGAGATCCTAATCATCCTCCCATTGGAAGTCCTCTAAATGCTATCACCACAGAAGGAGTCCTAGGGCAATCTACTGCCACTGCTTTGGCTGCAAAAATGTATGAGGATCGGATGAAGAGCTCTAATCCTATGGATACAGAGACATCCCAACCACTTTTAGATGCTAGAATGGCCCTTTTGAAATCAACAAATCATCCCGGTCAGATGGTTCAAGCAAATTCAGGAAGTGTGACAGCTTTGCAGCAAATGCAGGCTCGAACTCAGCAAATCCCGCAGGATATCAAAAGCGAAGTCAACATGGGAAACATGCAAAGATCCTTACCTATGGATCCTTCTTCCATTTATGGGCAGGGAGGAATGCAGTCAAAGTCTGGAATCACAAATGCAGGATTAAATCAGGGAGTTGGTGGTCTTACATTAAAAGGATGGCCTTTAACTGGCATAGAACAAATTCGCCCGGGTTTTGGAGCTCAAGTTCAAAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTGCCACAACAACAACAGCAGCAGCTCCTTGCCCAGGCACATGCACAAGGAAATATCGGCAATTCACAAGTGTATGGAGATATGGATCCACAGCGATTAAGGGGATTAGCTAGGGGAGGTTTGAATATGAAAGACAGTCAACCAATTGCAAATGATGGGCCAGTAGGCTCTCCAATGCAATCTACTTCATCTAAGATCAACATGCCACAGATGCAACAATCCATCTCCCAGCAACAACAGGATCCTTTGCATCCACAGCAAATGGTTCAGAATAACCGAAAAAGGAAAGGGCCTACATCTTCAGGAGCTGCCAATAGTACTGGTACAGGAAATACACACGGCCCTTCTAATTCTCAACCATCAACTCCATCTACTCATACTCCTGGTGATGGGGTTGCTATGGTGGGTAACTTGCAGAATGTCGCTGCTGTATCCAAAGGTTTGATGATGTATGGTACTGAAGGAGCAGGCGGTCTTGCATCTTCCACAAACCAGCTGTTGCAGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAATCATTTCTCTCACAAGATGATGGTGATGGAAAGGACTTATTTGGGACGTTGAAACGGAACCCTTCCGAGCATGCTACAGATGCTTCAAAAGCCTTTTCCTTCAGTGAAGTTAGTTCTATACGCAAAAGCAATGGAAAAGTTGTTTGCTGTCATTTCTCATCAGATGGGAAATTATTAGCCAGTGCTGGACATGACAAGAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACACAGAGCACACCAGAGGAACACACTGCTATTATTACCGACGTTCGCTTCAGACCAAATTCAACTCAGCTGGCAACGTCTTCGTTTGATACAACTGTTCGGCTTTGGGATGCTGCAGATCCAAGCTTTTCTTTGCAGGCATATAGTGGTCATACTTCACATGTTGCATCCCTTGATTTCCACCCTAAGAAAAATGACATTTTCTGCTCATGTGATGATAACAATGAGATTCGCTTATGGAATATTAGTCAATATTCTTGTACTCGCGTTTTTAAGGGAGGATCTACACAGGTGAGGTTTCAGCCGAGGAGTGGACACCTTCTGGCTGCAGCATCCAGCAATGTTGTGTCTGTCTTTGATGTTGAGACTGACAGGCAAATGCACTCATTACAGGGACACTCTGCGGAGGTACATTGTGTATGCTGGGATACAAATGGAGATTATTTGGCATCTGTGAGTCAAGAATCTGTTAAAGTTTGGTCACTTGCTTCTGGTGATTGCATTCATGAACTTAATTCCAGTGGAAACATGTTTCAATCTTGTGTTTTTCACCCAAGCTACTCTAACCTCTTGGTTATTGGAGGATACCAGTCACTGGAGCTATGGAACATGGCTGAAAATAAATGTATGACCATACCAGCTCATGAGGGTGTAATATCAGCTCTAGCACAATCACCAGTGACAGGGATGGTTGCTTCTGCCAGCCATGACAAGTCTGTAAAGATATGGAAATAA 2355 0.4323 MAQSNWEADKMLDVYIYDYLMKKKLHNTAKSFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSENAAAYLEAQQIKAKEQQLQMQQLQLMRHAQLQKRDPNHPPIGSPLNAITTEGVLGQSTATALAAKMYEDRMKSSNPMDTETSQPLLDARMALLKSTNHPGQMVQANSGSVTALQQMQARTQQIPQDIKSEVNMGNMQRSLPMDPSSIYGQGGMQSKSGITNAGLNQGVGGLTLKGWPLTGIEQIRPGFGAQVQKPLLQSANQFQLLPQQQQQQLLAQAHAQGNIGNSQVYGDMDPQRLRGLARGGLNMKDSQPIANDGPVGSPMQSTSSKINMPQMQQSISQQQQDPLHPQQMVQNNRKRKGPTSSGAANSTGTGNTHGPSNSQPSTPSTHTPGDGVAMVGNLQNVAAVSKGLMMYGTEGAGGLASSTNQLLQDDMEHFGDVGSLDDNVESFLSQDDGDGKDLFGTLKRNPSEHATDASKAFSFSEVSSIRKSNGKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTQSTPEEHTAIITDVRFRPNSTQLATSSFDTTVRLWDAADPSFSLQAYSGHTSHVASLDFHPKKNDIFCSCDDNNEIRLWNISQYSCTRVFKGGSTQVRFQPRSGHLLAAASSNVVSVFDVETDRQMHSLQGHSAEVHCVCWDTNGDYLASVSQESVKVWSLASGDCIHELNSSGNMFQSCVFHPSYSNLLVIGGYQSLELWNMAENKCMTIPAHEGVISALAQSPVTGMVASASHDKSVKIWK 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01916 784 Gene3D - 636 784 IPR015943 GO:0005515
Trre2g01916 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 588 623 - -
Trre2g01916 784 SMART WD40_4 663 701 IPR001680 GO:0005515
Trre2g01916 784 SMART WD40_4 704 743 IPR001680 GO:0005515
Trre2g01916 784 SMART WD40_4 745 784 IPR001680 GO:0005515
Trre2g01916 784 SMART WD40_4 538 577 IPR001680 GO:0005515
Trre2g01916 784 SMART WD40_4 496 535 IPR001680 GO:0005515
Trre2g01916 784 SMART WD40_4 581 621 IPR001680 GO:0005515
Trre2g01916 784 SMART WD40_4 624 660 IPR001680 GO:0005515
Trre2g01916 784 MobiDBLite consensus disorder prediction 331 406 - -
Trre2g01916 784 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 784 IPR044716 GO:0003714
Trre2g01916 784 MobiDBLite consensus disorder prediction 319 411 - -
Trre2g01916 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 545 577 - -
Trre2g01916 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 588 630 IPR001680 GO:0005515
Trre2g01916 784 ProSitePatterns Trp-Asp (WD) repeats signature. 522 536 IPR019775 -
Trre2g01916 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 503 544 IPR001680 GO:0005515
Trre2g01916 784 Coils Coil 79 99 - -
Trre2g01916 784 PRINTS G protein beta WD-40 repeat signature 522 536 IPR020472 -
Trre2g01916 784 PRINTS G protein beta WD-40 repeat signature 564 578 IPR020472 -
Trre2g01916 784 PRINTS G protein beta WD-40 repeat signature 771 784 IPR020472 -
Trre2g01916 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 752 784 IPR001680 GO:0005515
Trre2g01916 784 Pfam WD domain, G-beta repeat 751 784 IPR001680 GO:0005515
Trre2g01916 784 Pfam WD domain, G-beta repeat 585 621 IPR001680 GO:0005515
Trre2g01916 784 Pfam WD domain, G-beta repeat 540 577 IPR001680 GO:0005515
Trre2g01916 784 Pfam WD domain, G-beta repeat 508 535 IPR001680 GO:0005515
Trre2g01916 784 Pfam WD domain, G-beta repeat 666 701 IPR001680 GO:0005515
Trre2g01916 784 Gene3D - 481 635 IPR015943 GO:0005515
Trre2g01916 784 CDD WD40 499 784 - -
Trre2g01916 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 752 784 - -
Trre2g01916 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 545 577 IPR001680 GO:0005515
Trre2g01916 784 SMART Lish 8 40 IPR006594 GO:0005515
Trre2g01916 784 Pfam LisH 10 36 IPR006594 GO:0005515
Trre2g01916 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 503 538 - -
Trre2g01916 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 670 710 IPR001680 GO:0005515
Trre2g01916 784 SUPERFAMILY WD40 repeat-like 496 784 IPR036322 GO:0005515
Trre2g01916 784 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01916 Trre-Chr2 15646260 15657519 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01916 497 702 U-box Gene Family AT2G33340 26.852 1.19e-15 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Trre2g01916 WD40 0.0086 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01916 - - var:108326218 1360.51