Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01915 ATGGCGCAGAGTAATTGGGAAGCGGATAAGATGCTTGATGTTTACATATATGATTATTTGATGAAGAAAAAATTGCACAATACCGCCAAGTCATTTATGACAGAAGGGAAGGTTTCTCCGGATCCAGTAGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATTGCAAGGACAAATGAGAAACATTCTGAGAATGCTGCAGCATATTTAGAGGCTCAACAGATTAAAGCGAAAGAACAACAATTGCAAATGCAACAATTGCAATTAATGCGTCATGCTCAGCTGCAAAAAAGAGATCCTAATCATCCTCCCATTGGAAGTCCTCTAAATGCTATCACCACAGAAGGAGTCCTAGGGCAATCTACTGCCACTGCTTTGGCTGCAAAAATGTATGAGGATCGGATGAAGAGCTCTAATCCTATGGATACAGAGACATCCCAACCACTTTTAGATGCTAGAATGGCCCTTTTGAAATCAACAAATCATCCCGGTCAGATGGTTCAAGCAAATTCAGGAAGTGTGACAGCTTTGCAGCAAATGCAGGCTCGAACTCAGCAAATCCCGCAGGATATCAAAAGCGAAGTCAACATGGGAAACATGCAAAGATCCTTACCTATGGATCCTTCTTCCATTTATGGGCAGGGAGGAATGCAGTCAAAGTCTGGAATCACAAATGCAGGATTAAATCAGGGAGTTGGTGGTCTTACATTAAAAGGATGGCCTTTAACTGGCATAGAACAAATTCGCCCGGGTTTTGGAGCTCAAGTTCAAAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTGCCACAACAACAACAGCAGCAGCTCCTTGCCCAGGCACATGCACAAGGAAATATCGGCAATTCACAAGTGTATGGAGATATGGATCCACAGCGATTAAGGGGATTAGCTAGGGGAGGTTTGAATATGAAAGACAGTCAACCAATTGCAAATGATGGGCCAGTAGGCTCTCCAATGCAATCTACTTCATCTAAGCAGATCAACATGCCACAGATGCAACAATCCATCTCCCAGCAACAACAGGATCCTTTGCATCCACAGCAAATGGTTCAGAATAACCGAAAAAGGAAAGGGCCTACATCTTCAGGAGCTGCCAATAGTACTGGTACAGGAAATACACACGGCCCTTCTAATTCTCAACCATCAACTCCATCTACTCATACTCCTGGTGATGGGGTTGCTATGGTGGGTAACTTGCAGAATGTCGCTGCTGTATCCAAAGGTTTGATGATGTATGGTACTGAAGGAGCAGGCGGTCTTGCATCTTCCACAAACCAGCTGTTGCAGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAATCATTTCTCTCACAAGATGATGGTGATGGAAAGGACTTATTTGGGACGTTGAAACGGAACCCTTCCGAGCATGCTACAGATGCTTCAAAAGCCTTTTCCTTCAGTGAAGTTAGTTCTATACGCAAAAGCAATGGAAAAGTTGTTTGCTGTCATTTCTCATCAGATGGGAAATTATTAGCCAGTGCTGGACATGACAAGAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACACAGAGCACACCAGAGGAACACACTGCTATTATTACCGACGTTCGCTTCAGACCAAATTCAACTCAGCTGGCAACGTCTTCGTTTGATACAACTGTTCGGCTTTGGGATGCTGCAGATCCAAGCTTTTCTTTGCAGGCATATAGTGGTCATACTTCACATGTTGCATCCCTTGATTTCCACCCTAAGAAAAATGACATTTTCTGCTCATGTGATGATAACAATGAGATTCGCTTATGGAATATTAGTCAATATTCTTGTACTCGCGTTTTTAAGGGAGGATCTACACAGGTGAGGTTTCAGCCGAGGAGTGGACACCTTCTGGCTGCAGCATCCAGCAATGTTGTGTCTGTCTTTGATGTTGAGACTGACAGGCAAATGCACTCATTACAGGGACACTCTGCGGAGGTACATTGTGTATGCTGGGATACAAATGGAGATTATTTGGCATCTGTGAGTCAAGAATCTGTTAAAGTTTGGTCACTTGCTTCTGGTGATTGCATTCATGAACTTAATTCCAGTGGAAACATGTTTCAATCTTGTGTTTTTCACCCAAGCTACTCTAACCTCTTGGTTATTGGAGGATACCAGTCACTGGAGCTATGGAACATGGCTGAAAATAAATGTATGACCATACCAGCTCATGAGGGTGTAATATCAGCTCTAGCACAATCACCAGTGACAGGGATGGTTGCTTCTGCCAGCCATGACAAGTCTGTAAAGATATGGAAATAA 2358 0.4326 MAQSNWEADKMLDVYIYDYLMKKKLHNTAKSFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSENAAAYLEAQQIKAKEQQLQMQQLQLMRHAQLQKRDPNHPPIGSPLNAITTEGVLGQSTATALAAKMYEDRMKSSNPMDTETSQPLLDARMALLKSTNHPGQMVQANSGSVTALQQMQARTQQIPQDIKSEVNMGNMQRSLPMDPSSIYGQGGMQSKSGITNAGLNQGVGGLTLKGWPLTGIEQIRPGFGAQVQKPLLQSANQFQLLPQQQQQQLLAQAHAQGNIGNSQVYGDMDPQRLRGLARGGLNMKDSQPIANDGPVGSPMQSTSSKQINMPQMQQSISQQQQDPLHPQQMVQNNRKRKGPTSSGAANSTGTGNTHGPSNSQPSTPSTHTPGDGVAMVGNLQNVAAVSKGLMMYGTEGAGGLASSTNQLLQDDMEHFGDVGSLDDNVESFLSQDDGDGKDLFGTLKRNPSEHATDASKAFSFSEVSSIRKSNGKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTQSTPEEHTAIITDVRFRPNSTQLATSSFDTTVRLWDAADPSFSLQAYSGHTSHVASLDFHPKKNDIFCSCDDNNEIRLWNISQYSCTRVFKGGSTQVRFQPRSGHLLAAASSNVVSVFDVETDRQMHSLQGHSAEVHCVCWDTNGDYLASVSQESVKVWSLASGDCIHELNSSGNMFQSCVFHPSYSNLLVIGGYQSLELWNMAENKCMTIPAHEGVISALAQSPVTGMVASASHDKSVKIWK 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01915 785 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 504 539 - -
Trre2g01915 785 ProSitePatterns Trp-Asp (WD) repeats signature. 523 537 IPR019775 -
Trre2g01915 785 ProSiteProfiles Trp-Asp (WD) repeats profile. 753 785 IPR001680 GO:0005515
Trre2g01915 785 Gene3D - 482 636 IPR015943 GO:0005515
Trre2g01915 785 Gene3D - 637 785 IPR015943 GO:0005515
Trre2g01915 785 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 546 578 - -
Trre2g01915 785 Coils Coil 79 99 - -
Trre2g01915 785 ProSiteProfiles Trp-Asp (WD) repeats profile. 546 578 IPR001680 GO:0005515
Trre2g01915 785 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 589 624 - -
Trre2g01915 785 ProSiteProfiles Trp-Asp (WD) repeats profile. 504 545 IPR001680 GO:0005515
Trre2g01915 785 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 785 IPR044716 GO:0003714
Trre2g01915 785 ProSiteProfiles Trp-Asp (WD) repeats profile. 589 631 IPR001680 GO:0005515
Trre2g01915 785 PRINTS G protein beta WD-40 repeat signature 772 785 IPR020472 -
Trre2g01915 785 PRINTS G protein beta WD-40 repeat signature 523 537 IPR020472 -
Trre2g01915 785 PRINTS G protein beta WD-40 repeat signature 565 579 IPR020472 -
Trre2g01915 785 SMART WD40_4 539 578 IPR001680 GO:0005515
Trre2g01915 785 SMART WD40_4 705 744 IPR001680 GO:0005515
Trre2g01915 785 SMART WD40_4 497 536 IPR001680 GO:0005515
Trre2g01915 785 SMART WD40_4 746 785 IPR001680 GO:0005515
Trre2g01915 785 SMART WD40_4 582 622 IPR001680 GO:0005515
Trre2g01915 785 SMART WD40_4 625 661 IPR001680 GO:0005515
Trre2g01915 785 SMART WD40_4 664 702 IPR001680 GO:0005515
Trre2g01915 785 ProSiteProfiles Trp-Asp (WD) repeats profile. 671 711 IPR001680 GO:0005515
Trre2g01915 785 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 753 785 - -
Trre2g01915 785 SMART Lish 8 40 IPR006594 GO:0005515
Trre2g01915 785 MobiDBLite consensus disorder prediction 331 407 - -
Trre2g01915 785 Pfam LisH 10 36 IPR006594 GO:0005515
Trre2g01915 785 CDD WD40 500 785 - -
Trre2g01915 785 Pfam WD domain, G-beta repeat 509 536 IPR001680 GO:0005515
Trre2g01915 785 Pfam WD domain, G-beta repeat 667 702 IPR001680 GO:0005515
Trre2g01915 785 Pfam WD domain, G-beta repeat 752 785 IPR001680 GO:0005515
Trre2g01915 785 Pfam WD domain, G-beta repeat 541 578 IPR001680 GO:0005515
Trre2g01915 785 Pfam WD domain, G-beta repeat 586 622 IPR001680 GO:0005515
Trre2g01915 785 SUPERFAMILY WD40 repeat-like 497 785 IPR036322 GO:0005515
Trre2g01915 785 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Trre2g01915 785 MobiDBLite consensus disorder prediction 319 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01915 Trre-Chr2 15646260 15657519 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01915 498 703 U-box Gene Family AT2G33340 26.852 1.04e-15 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Trre2g01915 WD40 0.0086 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01915 - - var:108326218 1351.27