Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01914 ATGGCGCAGAGTAATTGGGAAGCGGATAAGATGCTTGATGTTTACATATATGATTATTTGATGAAGAAAAAATTGCACAATACCGCCAAGTCATTTATGACAGAAGGGAAGGTTTCTCCGGATCCAGTAGCTAAAACTCAAAATGCAGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGGATATTTTTATTGCAAGGACAAATGAGAAACATTCTGAGAATGCTGCAGCATATTTAGAGGCTCAACAGATTAAAGCGAAAGAACAACAATTGCAAATGCAACAATTGCAATTAATGCGTCATGCTCAGCTGCAAAAAAGAGATCCTAATCATCCTCCCATTGGAAGTCCTCTAAATGCTATCACCACAGAAGGAGTCCTAGGGCAATCTACTGCCACTGCTTTGGCTGCAAAAATGTATGAGGATCGGATGAAGAGCTCTAATCCTATGGATACAGAGACATCCCAACCACTTTTAGATGCTAGAATGGCCCTTTTGAAATCAACAAATCATCCCGGTCAGATGGTTCAAGCAAATTCAGGAAGTGTGACAGCTTTGCAGCAAATGCAGGCTCGAACTCAGCAAATCCCGCAGGATATCAAAAGCGAAGTCAACATGGGAAACATGCAAAGATCCTTACCTATGGATCCTTCTTCCATTTATGGGCAGGGAGGAATGCAGTCAAAGTCTGGAATCACAAATGCAGGATTAAATCAGGGAGTTGGTGGTCTTACATTAAAAGGATGGCCTTTAACTGGCATAGAACAAATTCGCCCGGGTTTTGGAGCTCAAGTTCAAAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTGCCACAACAACAACAGCAGCAGCTCCTTGCCCAGGCACATGCACAAGGAAATATCGGCAATTCACAAGTGTATGGAGATATGGATCCACAGCGATTAAGGGGATTAGCTAGGGGAGGTTTGAATATGAAAGACAGTCAACCAATTGCAAATGATGGGCCAGTAGGCTCTCCAATGCAATCTACTTCATCTAAGATCAACATGCCACAGATGCAACAATCCATCTCCCAGCAACAACAGGATCCTTTGCATCCACAGCAAATGGTTCAGAATAACCGAAAAAGGAAAGGGCCTACATCTTCAGGAGCTGCCAATAGTACTGGTACAGGAAATACACACGGCCCTTCTAATTCTCAACCATCAACTCCATCTACTCATACTCCTGGTGATGGGGTTGCTATGGTGGGTAACTTGCAGAATGTCGCTGCTGTATCCAAAGGTTTGATGATGTATGGTACTGAAGGAGCAGGCGGTCTTGCATCTTCCACAAACCAGCTGTTGCAGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAATCATTTCTCTCACAAGATGATGGTGATGGAAAGGACTTATTTGGGACGTTGAAACGGAACCCTTCCGAGCATGCTACAGATGCTTCAAAAGCCTTTTCCTTCAGTGAAGTTAGTTCTATACGCAAAAGCAATGGAAAAGTTGTTTGCTGTCATTTCTCATCAGATGGGAAATTATTAGCCAGTGCTGGACATGACAAGAAGGTTGTTCTGTGGAACATGGAGACACTGCAAACACAGAGCACACCAGAGGAACACACTGCTATTATTACCGACGTTCGCTTCAGACCAAATTCAACTCAGCTGGCAACGTCTTCGTTTGATACAACTGTTCGGCTTTGGGATGCTGCAGATCCAAGCTTTTCTTTGCAGGCATATAGTGGTCATACTTCACATGTTGCATCCCTTGATTTCCACCCTAAGAAAAATGACATTTTCTGCTCATGTGATGATAACAATGAGATTCGCTTATGGAATATTAGTCAATATTCTTGTACTCGCGTTTTTAAGGGAGGATCTACACAGGTGAGGTTTCAGCCGAGGAGTGGACACCTTCTGGCTGCAGCATCCAGCAATGTTGTGTCTGTCTTTGATGTTGAGACTGACAGGCAAATGCACTCATTACAGGGACACTCTGCGGAGGTACATTGTGTATGCTGGGATACAAATGGAGATTATTTGGCATCTGTGAGTCAAGAATCTGTTAAAGTTTGGTCACTTGCTTCTGGTGATTGCATTCATGAACTTAATTCCAGTGGAAACATGTTTCAATCTTGTGTTTTTCACCCAAGCTACTCTAACCTCTTGGTTATTGGAGGATACCAGTCACTGGAGCTATGGAACATGGCTGAAAATAAATGTATGACCATACCAGCTCATGAGGGTGTAATATCAGCTCTAGCACAATCACCAGTGACAGGGATGGTTGCTTCTGCCAGCCATGACAAGTCTGTAAAGATATGGAAATAA 2373 0.4315 MAQSNWEADKMLDVYIYDYLMKKKLHNTAKSFMTEGKVSPDPVAKTQNAAIDAPGGFLFEWWSVFWDIFIARTNEKHSENAAAYLEAQQIKAKEQQLQMQQLQLMRHAQLQKRDPNHPPIGSPLNAITTEGVLGQSTATALAAKMYEDRMKSSNPMDTETSQPLLDARMALLKSTNHPGQMVQANSGSVTALQQMQARTQQIPQDIKSEVNMGNMQRSLPMDPSSIYGQGGMQSKSGITNAGLNQGVGGLTLKGWPLTGIEQIRPGFGAQVQKPLLQSANQFQLLPQQQQQQLLAQAHAQGNIGNSQVYGDMDPQRLRGLARGGLNMKDSQPIANDGPVGSPMQSTSSKINMPQMQQSISQQQQDPLHPQQMVQNNRKRKGPTSSGAANSTGTGNTHGPSNSQPSTPSTHTPGDGVAMVGNLQNVAAVSKGLMMYGTEGAGGLASSTNQLLQDDMEHFGDVGSLDDNVESFLSQDDGDGKDLFGTLKRNPSEHATDASKAFSFSEVSSIRKSNGKVVCCHFSSDGKLLASAGHDKKVVLWNMETLQTQSTPEEHTAIITDVRFRPNSTQLATSSFDTTVRLWDAADPSFSLQAYSGHTSHVASLDFHPKKNDIFCSCDDNNEIRLWNISQYSCTRVFKGGSTQVRFQPRSGHLLAAASSNVVSVFDVETDRQMHSLQGHSAEVHCVCWDTNGDYLASVSQESVKVWSLASGDCIHELNSSGNMFQSCVFHPSYSNLLVIGGYQSLELWNMAENKCMTIPAHEGVISALAQSPVTGMVASASHDKSVKIWK 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01914 790 Coils Coil 85 105 - -
Trre2g01914 790 ProSiteProfiles Trp-Asp (WD) repeats profile. 594 636 IPR001680 GO:0005515
Trre2g01914 790 Gene3D - 642 790 IPR015943 GO:0005515
Trre2g01914 790 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 594 629 - -
Trre2g01914 790 ProSiteProfiles Trp-Asp (WD) repeats profile. 509 550 IPR001680 GO:0005515
Trre2g01914 790 CDD WD40 505 790 - -
Trre2g01914 790 Gene3D - 491 641 IPR015943 GO:0005515
Trre2g01914 790 Pfam WD domain, G-beta repeat 514 541 IPR001680 GO:0005515
Trre2g01914 790 Pfam WD domain, G-beta repeat 591 627 IPR001680 GO:0005515
Trre2g01914 790 Pfam WD domain, G-beta repeat 672 707 IPR001680 GO:0005515
Trre2g01914 790 Pfam WD domain, G-beta repeat 757 790 IPR001680 GO:0005515
Trre2g01914 790 Pfam WD domain, G-beta repeat 546 583 IPR001680 GO:0005515
Trre2g01914 790 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 551 583 - -
Trre2g01914 790 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 509 544 - -
Trre2g01914 790 PRINTS G protein beta WD-40 repeat signature 570 584 IPR020472 -
Trre2g01914 790 PRINTS G protein beta WD-40 repeat signature 528 542 IPR020472 -
Trre2g01914 790 PRINTS G protein beta WD-40 repeat signature 777 790 IPR020472 -
Trre2g01914 790 ProSiteProfiles Trp-Asp (WD) repeats profile. 758 790 IPR001680 GO:0005515
Trre2g01914 790 ProSiteProfiles Trp-Asp (WD) repeats profile. 676 716 IPR001680 GO:0005515
Trre2g01914 790 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 790 IPR044716 GO:0003714
Trre2g01914 790 MobiDBLite consensus disorder prediction 337 412 - -
Trre2g01914 790 SMART Lish 8 40 IPR006594 GO:0005515
Trre2g01914 790 MobiDBLite consensus disorder prediction 325 417 - -
Trre2g01914 790 Pfam LisH 10 36 IPR006594 GO:0005515
Trre2g01914 790 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 758 790 - -
Trre2g01914 790 SMART WD40_4 587 627 IPR001680 GO:0005515
Trre2g01914 790 SMART WD40_4 630 666 IPR001680 GO:0005515
Trre2g01914 790 SMART WD40_4 544 583 IPR001680 GO:0005515
Trre2g01914 790 SMART WD40_4 669 707 IPR001680 GO:0005515
Trre2g01914 790 SMART WD40_4 751 790 IPR001680 GO:0005515
Trre2g01914 790 SMART WD40_4 502 541 IPR001680 GO:0005515
Trre2g01914 790 SMART WD40_4 710 749 IPR001680 GO:0005515
Trre2g01914 790 ProSitePatterns Trp-Asp (WD) repeats signature. 528 542 IPR019775 -
Trre2g01914 790 ProSiteProfiles Trp-Asp (WD) repeats profile. 551 583 IPR001680 GO:0005515
Trre2g01914 790 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Trre2g01914 790 SUPERFAMILY WD40 repeat-like 502 790 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01914 Trre-Chr2 15646260 15657519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01914 503 708 U-box Gene Family AT2G33340 26.852 1.07e-15 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Trre2g01914 WD40 0.0087 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01914 - - var:108326218 1353.96