Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01906 ATGGCGAAGGGTGACGACTCTATCCTAAAAAAGCGGAACAAAAAGATTAGAAAAAGACTAAGCGGTAAAACTGACAAGACTTCCGTCTCTGCTAAGATTGCCGCTGTTATCGCCGCCAAGAAACGCCGTAAGGCCGGAAAACGCCGCATCTGCGAGGGTATGTGTTTTAGTTTACCTACTCTAGAGGATCCATTTAATGATAGACGTGGAAAACCGGAATTCAAAAAAAAGGAGGAAACTGAACAGAAAAAACCTTTCCAAAAAGAAAAGACACTTCCTGTTAAAGGGAAGAGTGCACCCAATGGGAAAGGCGCAGTTCGTCAAAGTATTTCACACAAATTGAATCAACAAACAGGAAATGATGATGCTAACAATGAAAGTCACTCAGAAAAGGATAATGAAATTTCAGACTTTCCTTCCAAATTTGTTTTTTGGTGTCTGAGTACAATTGAAAACGCACTGCGACATGATGATGCCTACACTGATGGAGAGGGAAACTCTTTCTTTCTAAACTCGTGGGGATTAGAATTTTCAAAGTGTTTTCCTACTGGCAAAAATCTGATGGACACTGGTGGAACCTTTGCTACTACTGAGCAAATTGCATGGATGGTTTCTGCGGCAGCTGATACTTTTGTTAGAAAAGAGAAACAAGACATATCAATAGACACCCCTTTTCTTTTGTTCCTCGTTCCTTCCGAAAAAAAAGCTGTCCAGGTTCGAACGGTTTGCAAGCCTTTGAAATCTATAGGAATACATACAGTGAGTGTTCATCCTGGCGCTTCCTTAGATCATCAAATTCAAGGTCTAAAAAGTTGTGAGCCTGAGTTTCTCATTGCTACTCCCGAGAGGCTCTTGGAACTTGTTTCAATGAAGGCAATTGATATTTCTGGTGTCTCTATGCTGATTATCGATGGGCTCAATGCTATTTGTAATGCTGGCCACGCTGATGCAATAAAATCCATCAAGAAGTTTATTTCTGGCAATCCCAGTCTTGTGGTTTTCAATGATAGCTTTAACCCTACATCTATCCCAGTTGTTCGGCATCTTCTGACGGAACCTATTTGTAGAATATCTATCGATAATTCAATCACCAGCCTAAGTTCATGCATTGTACAGTCTGTTCAAGTGTGTACATCGGACGAAGATAAACGTGTTAAGAGCCTCGATATCCTGTGTCAATTTTGGAGCAGCCAGAATCATAGTTCAAACCTTCTATATATTTTGAGGAAAGATGTCAAGTGCCATAAATTAGTGAAGGCTCTCGAATCCATGGGTTGTTCCAAGTCACTTGATTCTAATGCTGCGAATAGGAGATTGGTTACGATGATTGATTTGGAGGATATCTCTACTGCGGATATAGGGATGTATGATGTAGTAGTCCTACCAAGTTTTGTACCCTCCATGGACACTTATGAGCATATTTTGACAAACATGGCCCGCCAAAGTGTCAATGGTGTTTTGCATGCTTTCTTAACAAAAAGTGATACAGAACTTGCTGGACCACTCATTTCAATTCTTGAACAATGTAAGCAGGACGTGCCTGAGACCCTGCAAGATTTGCATCAGGCATCAAACATGTTGGAAGATTGA 1590 0.4075 MAKGDDSILKKRNKKIRKRLSGKTDKTSVSAKIAAVIAAKKRRKAGKRRICEGMCFSLPTLEDPFNDRRGKPEFKKKEETEQKKPFQKEKTLPVKGKSAPNGKGAVRQSISHKLNQQTGNDDANNESHSEKDNEISDFPSKFVFWCLSTIENALRHDDAYTDGEGNSFFLNSWGLEFSKCFPTGKNLMDTGGTFATTEQIAWMVSAAADTFVRKEKQDISIDTPFLLFLVPSEKKAVQVRTVCKPLKSIGIHTVSVHPGASLDHQIQGLKSCEPEFLIATPERLLELVSMKAIDISGVSMLIIDGLNAICNAGHADAIKSIKKFISGNPSLVVFNDSFNPTSIPVVRHLLTEPICRISIDNSITSLSSCIVQSVQVCTSDEDKRVKSLDILCQFWSSQNHSSNLLYILRKDVKCHKLVKALESMGCSKSLDSNAANRRLVTMIDLEDISTADIGMYDVVVLPSFVPSMDTYEHILTNMARQSVNGVLHAFLTKSDTELAGPLISILEQCKQDVPETLQDLHQASNMLED 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01906 529 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 13 509 - -
Trre2g01906 529 Gene3D - 214 366 IPR027417 -
Trre2g01906 529 MobiDBLite consensus disorder prediction 1 28 - -
Trre2g01906 529 Pfam DEAD/DEAH box helicase 203 325 IPR011545 GO:0003676|GO:0005524
Trre2g01906 529 MobiDBLite consensus disorder prediction 66 134 - -
Trre2g01906 529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 354 IPR027417 -
Trre2g01906 529 MobiDBLite consensus disorder prediction 66 91 - -
Trre2g01906 529 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01906 Trre-Chr2 15588687 15592859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01906 215 520 Eukaryotic Initiation Factors Gene Family AT1G72730 20.000 4.05e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01906 - - gmx:100809099 671.389