Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01900 ATGTACGGCGGTGGTCACCGTGAACGTGAATCTGAATCTGATACCCAGGCCCGAATGCACAGCGATGAAGATGACGATGATGAAGGTTCGTTTAAGAGCTGGGCAAAACAAACAGAAGAAAGCTATCAGTTGCAACTCGCACTGGCGCTTCGCATTTCATCTCATTCAGCTTCTTCTGCTCAATCCAATTACTTGTTGGATTTTGAACCCACCTCTTCTCATTCTTCTTCTGATTCCCCTCAATCACTTTCACACCGTTTTTGGGTAAATGGTTGTTTGCAATACTCTGACAAAATTCTAGATGGCTTTTACATAATCCATGGGATGGATCCATATACGTGGACTATAAGTACCGATATGCAGAATGTTGGTATGATTCCATCATTTGAATCACTGATGTCTGTTAAACCATGTGATAACTCCTCAGTTGTAGTGGTTTCTATTGACAAAGCTAGAGACCCTGGCTTGAGAGAACTGCAAAGTGGGGTATTAAGTCTTTCAAGTAACTGGATTACTATCAAAGATGCAACTGATCAGCTTGCAAATCTTGTTTATAGTAGGATGGGGGGAGGATCTTCCGACGAAGAAAATTTAGGTACACGCTGGAAGGAATGCTCTGAAATACTTAAAAGCTGTCTACAATGTATCATTCTTCCTATTGGAAGCTTACCTGTTGGCCTTTGTGTCCATCGAGCATTGCTGTTTAAAGTGTTAGCGGATTTAATTAACCTACCGTGTCGAATTGCTAAGGGCTGCAAGTATTGTAGAAAGGACATGGGTGCTTCTTGTATAGTACAATTTGGTTCTGACAGGGAGTATATGATTGATTTAGTAGGAAGGCCTGGGGAAACATGTCAACCTGATTCTTCAGTGAATTCTGCATCTTCGATGTTGATCCCTTCACCATTATGTCATCCAAGGTTCAAGCCAGTTGAAACAGCTGAACATACAAAGACAATGGCCCAATTGTATTTCTTGGACAACCAAGCACTGCATCTTGTATTTGATTCCAAATCAGGAGGTACTATTGATTGTAGTGACAACATGGATCTACAGCAAACTGAAATGTTCGGCACAAACTATGCTAGTGGGAACAACCATATAGTTGCTTTGAGTCCTGGTACAGAGGAACATGTGTCTTTCAATGAAGCAACCCAGTCAGTAGTGAATTATTCAAGTCATGAAGTTGACCTTGAGGAGGAGGATCTGGACATTCCGTGGAGTGAACTTATTTTGAAGGAGAACATTGGGACAGGGTCATTTGGAACTGTCCTTCGTGCGGACTGGCGTGGCTCTGATGTTGCTGTGAAGATACTTAAGGTGCAAGGTTTTGATTCTGAGCGATTTGAAGAGTTTCTAAAGGAGGTCACACTCATGAAGCGCCTACGTCATCCAAACATTGTACTTCTAATGGGTGCCGTTATCCAACCACCAAAGTTATCAATAGTAACAGAATATTTATCAAGAGGAAGCTTGTATGAACTTCTGCAGATGCCAACTGTTGGACCCTCAATAAGTGAGAAGCGTCGTTTAAGTATGGCATACGACGTGGCAAGTGGGATGAATTATCTTCATCAAATGAAACCTCCTATTGTTCATAGAGATTTGAAGTCTCCAAATCTTTTGGTTGATGATTCATACACTGTTAAGGCCTGCAATTGCCTTACTTCGGGTGATCCATGA 1683 0.4177 MYGGGHRERESESDTQARMHSDEDDDDEGSFKSWAKQTEESYQLQLALALRISSHSASSAQSNYLLDFEPTSSHSSSDSPQSLSHRFWVNGCLQYSDKILDGFYIIHGMDPYTWTISTDMQNVGMIPSFESLMSVKPCDNSSVVVVSIDKARDPGLRELQSGVLSLSSNWITIKDATDQLANLVYSRMGGGSSDEENLGTRWKECSEILKSCLQCIILPIGSLPVGLCVHRALLFKVLADLINLPCRIAKGCKYCRKDMGASCIVQFGSDREYMIDLVGRPGETCQPDSSVNSASSMLIPSPLCHPRFKPVETAEHTKTMAQLYFLDNQALHLVFDSKSGGTIDCSDNMDLQQTEMFGTNYASGNNHIVALSPGTEEHVSFNEATQSVVNYSSHEVDLEEEDLDIPWSELILKENIGTGSFGTVLRADWRGSDVAVKILKVQGFDSERFEEFLKEVTLMKRLRHPNIVLLMGAVIQPPKLSIVTEYLSRGSLYELLQMPTVGPSISEKRRLSMAYDVASGMNYLHQMKPPIVHRDLKSPNLLVDDSYTVKACNCLTSGDP 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01900 560 ProSiteProfiles Protein kinase domain profile. 410 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01900 560 Gene3D Transferase(Phosphotransferase) domain 1 488 557 - -
Trre2g01900 560 SUPERFAMILY Protein kinase-like (PK-like) 396 552 IPR011009 -
Trre2g01900 560 SMART serkin_6 410 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre2g01900 560 FunFam Serine/threonine-protein kinase isoform 1 400 488 - -
Trre2g01900 560 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 67 553 - -
Trre2g01900 560 Pfam Protein tyrosine and serine/threonine kinase 411 552 IPR001245 GO:0004672|GO:0006468
Trre2g01900 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Trre2g01900 560 MobiDBLite consensus disorder prediction 1 34 - -
Trre2g01900 560 ProSitePatterns Protein kinases ATP-binding region signature. 416 437 IPR017441 GO:0005524
Trre2g01900 560 Gene3D Phosphorylase Kinase; domain 1 403 487 - -
Trre2g01900 560 Pfam Ethylene-responsive protein kinase Le-CTR1 81 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01900 Trre-Chr2 15554652 15564016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01900 34 553 MAP Kinase Kinase Kinase AT5G03730 53.005 4.14e-175 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Trre2g01900 EDR1 3.3e-72 CL0125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01900 K14510 - gmx:100807496 876.7