Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01884 ATGTCTGAAACACTTTGGTCTGGTGACAATGTTACTAGAGAGAATGCAAAGCAAAAGCGCAAGATGGAGGAAAGAGTTGGTGTTGATTCAGAGGTGTCCCTATCTCTGTCTCTGAGTCTAGGAGGTGGAGGAGGAGAAGGAGGATCTTCATTCAAATCCCTCAAGAGCCACGGGGAGCAGAGGGAATATCCATGTAAGTTTTGCAACAAAAAGTTTTCAAATTCTCAAGCTTTAAGAGGACACCAGAACGCCCATAGGCGTGAAAGGGTCCTTTTAAAAATGGACAAAGAAATTCAAATGGGAATTTATGGACTTGGTGCTCGTCTATGTCCATACTCAAATCATAATTATCATCATCAACATCCATTCACTACTGCAGGGTCCACACCTTTTTACCATGGAATTGGATGGCCCCATCTTGTTGCACCTGCAGGCTATGGTAACCCATTTGGGATGATCAACAACTCTTCTTTAGCTACTCAAACTCCACTGAATAATTATAATAATAACATGGGATTTGGAAATTATGAACATAATAATCAGCTGCAGGTTCCTTCATTTGGTGCTGCTCTTGGTGGTCCTTTTCTGCATGGAAATAACAATCACAATGTCCCAAATAACCACCATGTTTCATCATCACCCCGTTGA 648 0.4167 MSETLWSGDNVTRENAKQKRKMEERVGVDSEVSLSLSLSLGGGGGEGGSSFKSLKSHGEQREYPCKFCNKKFSNSQALRGHQNAHRRERVLLKMDKEIQMGIYGLGARLCPYSNHNYHHQHPFTTAGSTPFYHGIGWPHLVAPAGYGNPFGMINNSSLATQTPLNNYNNNMGFGNYEHNNQLQVPSFGAALGGPFLHGNNNHNVPNNHHVSSSPR 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01884 215 Gene3D Classic Zinc Finger 49 101 - -
Trre2g01884 215 MobiDBLite consensus disorder prediction 1 26 - -
Trre2g01884 215 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 49 199 IPR044246 GO:0009788
Trre2g01884 215 SUPERFAMILY beta-beta-alpha zinc fingers 60 90 IPR036236 -
Trre2g01884 215 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Trre2g01884 215 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Trre2g01884 215 SMART c2h2final6 63 85 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01884 Trre-Chr2 15417878 15418525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01884 59 139 C2H2 Transcription Factor Family AT1G67030 45.122 6.75e-12 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre2g01884 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01884 - - tpra:123904723 239.195