Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01881 ATGGAAAACGAACTCGATTGGGAATGTTTCTTCGATCAGTTACCAGACTTTGAACAAGTCGCCGATTTTTTTCAGGAGTATGTAACCAATCCACCTGTTTCCATCGCTGATACTCCTTCGCCAATTTCCTCGCTATCAGAGATTGAGAATTTGCTCATGACTGATTCCGACGAGGGAGTTGCGTCGCCGGAGGATTCCGACTATGATAAGCTTCTGGCTGAGATTCTCATTGAGCCGCTCCCTGAATCTGAGGAAGGTTCGGTTGTTCCTTCTGATAAAGACGGAGTTGATCCATCTACTCCTGAAGAGGTTCCTTCTGAACCTGTGTCGAAGAAGCAAATAAGGCAGATGAGGAACAGGGATGCTGCTGTGAAATCAAGAGAGAGGAAGAAGATGTATGTGAAAAACCTTGAGACGAAAAGTAGGTATTTTGAAGGGGAATGCAGAAGATTGGAGCATTTACTCCAGTGCTGCTATGCTGAGAACCATGCTTTGCGGTTTTGTTTGCAATCGCGTGGTGCATTTGGTGCTCCCATGACCATGCAGGAGTCTGCTGTGCTCTTGTTGGAATCCCTGCTGCTGGGTTCCCTGCTATGGTTCATGGGCATCATGTGGCAACTCAGTCTACCCCTCCTACTGTGGCTAACAGTGTCACCTCCAAGAGAAAACATGGAACACAAAGGTCTAAGAAGGGTGACTCTAAAAGGGCCAAACAATAATATCTCTAAATATTTCCTGACTCAGTCGTTTGTAAAAAGTAGAAGATGCCAAGCTTCAAGAACAAAGATGAAATTTGATTTTATCGTGTTCTAA 813 0.449 MENELDWECFFDQLPDFEQVADFFQEYVTNPPVSIADTPSPISSLSEIENLLMTDSDEGVASPEDSDYDKLLAEILIEPLPESEEGSVVPSDKDGVDPSTPEEVPSEPVSKKQIRQMRNRDAAVKSRERKKMYVKNLETKSRYFEGECRRLEHLLQCCYAENHALRFCLQSRGAFGAPMTMQESAVLLLESLLLGSLLWFMGIMWQLSLPLLLWLTVSPPRENMEHKGLRRVTLKGPNNNISKYFLTQSFVKSRRCQASRTKMKFDFIVF 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01881 270 Gene3D - 110 170 - -
Trre2g01881 270 PANTHER BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTOR F-RELATED 87 233 - -
Trre2g01881 270 MobiDBLite consensus disorder prediction 82 121 - -
Trre2g01881 270 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 115 129 IPR004827 GO:0003700|GO:0006355
Trre2g01881 270 SUPERFAMILY Leucine zipper domain 111 169 IPR046347 GO:0003700|GO:0006355
Trre2g01881 270 CDD bZIP_HY5-like 112 163 - -
Trre2g01881 270 Pfam bZIP transcription factor 110 153 IPR004827 GO:0003700|GO:0006355
Trre2g01881 270 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 109 152 IPR004827 GO:0003700|GO:0006355
Trre2g01881 270 SMART brlzneu 107 171 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01881 Trre-Chr2 15394432 15396948 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01881 40 270 bZIP Transcription Factor Family AT1G42990 32.707 8.83e-16 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre2g01881 bZIP_1 2.4e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01881 - - pvu:PHAVU_007G247600g 275.789