Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01880 ATGGAAAACGAACTCGATTGGGAATGTTTCTTCGATCAGTTACCAGACTTTGAACAAGTCGCCGATTTTTTTCAGGAGTATGTAACCAATCCACCTGTTTCCATCGCTGATACTCCTTCGCCAATTTCCTCGCTATCAGAGATTGAGAATTTGCTCATGACTGATTCCGACGAGGGAGTTGCGTCGCCGGAGGATTCCGACTATGATAAGCTTCTGGCTGAGATTCTCATTGAGCCGCTCCCTGAATCTGAGGAAGGTTCGGTTGTTCCTTCTGATAAAGACGGAATTGATTCATCATCTCCTGAAGAGGTTCCTTCTGATAAAGACGGAGTTGATCCATCTACTCCTGAAGAGGTTCCTTCTGAACCTGTGTCGAAGAAGCAAATAAGGCAGATGAGGAACAGGGATGCTGCTGTGAAATCAAGAGAGAGGAAGAAGATGTATGTGAAAAACCTTGAGACGAAAAGTAGGTATTTTGAAGGGGAATGCAGAAGATTGGAGCATTTACTCCAGTGCTGCTATGCTGAGAACCATGCTTTGCGGTTTTGTTTGCAATCGCGTGGTGCATTTGGTGCTCCCATGACCATGCAGGAGTCTGCTGTGCTCTTGTTGGAATCCCTGCTGCTGGGTTCCCTGCTATGGTTCATGGGCATCATGTGGCAACTCAGTCTACCCCTCCTACTGTGGCTAACAGTGTCACCTCCAAGAGAAAACATGGAACACAAAGGTCTAAGAAGGGTGACTCTAAAAGGGCCAAACAATAATATCTCTAAATATTTCCTGACTCAGTCGTTTGTAAAAAGTAGAAGATGCCAAGCTTCAAGAACAAAGATGAAATTTGATTTTATCGTGTTCTAA 858 0.4464 MENELDWECFFDQLPDFEQVADFFQEYVTNPPVSIADTPSPISSLSEIENLLMTDSDEGVASPEDSDYDKLLAEILIEPLPESEEGSVVPSDKDGIDSSSPEEVPSDKDGVDPSTPEEVPSEPVSKKQIRQMRNRDAAVKSRERKKMYVKNLETKSRYFEGECRRLEHLLQCCYAENHALRFCLQSRGAFGAPMTMQESAVLLLESLLLGSLLWFMGIMWQLSLPLLLWLTVSPPRENMEHKGLRRVTLKGPNNNISKYFLTQSFVKSRRCQASRTKMKFDFIVF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01880 285 SMART brlzneu 122 186 IPR004827 GO:0003700|GO:0006355
Trre2g01880 285 MobiDBLite consensus disorder prediction 128 142 - -
Trre2g01880 285 MobiDBLite consensus disorder prediction 79 142 - -
Trre2g01880 285 CDD bZIP_HY5-like 127 178 - -
Trre2g01880 285 Pfam bZIP transcription factor 125 168 IPR004827 GO:0003700|GO:0006355
Trre2g01880 285 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 124 167 IPR004827 GO:0003700|GO:0006355
Trre2g01880 285 PANTHER BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTOR F-RELATED 2 248 - -
Trre2g01880 285 SUPERFAMILY Leucine zipper domain 126 184 IPR046347 GO:0003700|GO:0006355
Trre2g01880 285 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 130 144 IPR004827 GO:0003700|GO:0006355
Trre2g01880 285 Gene3D - 125 185 - -
Trre2g01880 285 MobiDBLite consensus disorder prediction 87 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01880 Trre-Chr2 15394432 15396948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01880 40 285 bZIP Transcription Factor Family AT1G42990 37.970 3.87e-16 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre2g01880 bZIP_1 2.6e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01880 - - pvu:PHAVU_007G247600g 275.018