Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre2g01870 | ATGAGTTCTTATAATTTGAGGAGTAACAGAAGAAGAAATGAAATTTTACCAGCTCCGGAGTCTTCACAGGGAGAAAGACCCTCTGAACGGGTACCCTTAGAACGGTTACCTCTAGTTTGGGGACGAACAAATTGGAGGTCTTTACAGGGAGAGAGACCCTCTGAACGACTACAAGTTCCCGTAGTTGATTTTGCTGAAAATGACGATGATGTCATTGAAACTTCGTCAAGAGACTTTTCTGAGGCGGTAGCAAATGCGAGAAGAACTCGCAGAAGAATTGAACGTGCCTCAATTATGGAAAATCAAACCAGGCCAACTTATTTTATGGACAACAGAGACCGCAGTACTTCCCAACCAATTGATTCTATTTATATCCATTTGGAAGGAGGCAGCACCAGTACTCAAGTGATTGAAAATGCCACAGAGCCACTTGATAGTGAGACTAACAAGGAAACTCTTGAGCCTGAAAATGAAACAGCTGATCCTCCAAAAGAGGCTAGCATAAAATGTCCAATATGTATGAATCCTAGTGTGGAGGAAATGACAACAAGATGTGGCCATATTTTTTGCAAGAATTGCATCACAGCTGCACTAACTGCATCTCGTATATGCCCTACGTGTGGAAAAAAGGCTACTAAGAGGGGACTAGTCAGGGTGTTTCTTCCATCTACTAGAATTGCTCATGAATGTATGTCCATTTTTTATTAA | 708 | 0.4153 | MSSYNLRSNRRRNEILPAPESSQGERPSERVPLERLPLVWGRTNWRSLQGERPSERLQVPVVDFAENDDDVIETSSRDFSEAVANARRTRRRIERASIMENQTRPTYFMDNRDRSTSQPIDSIYIHLEGGSTSTQVIENATEPLDSETNKETLEPENETADPPKEASIKCPICMNPSVEEMTTRCGHIFCKNCITAALTASRICPTCGKKATKRGLVRVFLPSTRIAHECMSIFY | 235 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre2g01870 | 235 | MobiDBLite | consensus disorder prediction | 144 | 163 | - | - | |
| Trre2g01870 | 235 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
| Trre2g01870 | 235 | PANTHER | ELFLESS, ISOFORM B | 37 | 224 | - | - | |
| Trre2g01870 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 126 | 230 | IPR013083 | - | |
| Trre2g01870 | 235 | MobiDBLite | consensus disorder prediction | 142 | 164 | - | - | |
| Trre2g01870 | 235 | SMART | ring_2 | 170 | 207 | IPR001841 | - | |
| Trre2g01870 | 235 | Pfam | Zinc finger, C3HC4 type (RING finger) | 169 | 207 | - | - | |
| Trre2g01870 | 235 | SUPERFAMILY | RING/U-box | 169 | 212 | - | - | |
| Trre2g01870 | 235 | ProSitePatterns | Zinc finger RING-type signature. | 185 | 194 | IPR017907 | - | |
| Trre2g01870 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 170 | 207 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre2g01870 | Trre-Chr2 | 15328453 | 15333036 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre2g01870 | 66 | 225 | C3H Transcription Factor Family | AT3G07200 | 35.625 | 8.93e-24 | 92.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre2g01870 | K22651 | - | tpra:123891564 | 280.796 |