Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre2g01869 | ATGAATTCTCATAATTTGAGGAGTAACAGACGAAGAAATGAAACTCTACCACCTTGGGAGTCTTCACAGAGAGAGGAAACCTTTGAACGGCCGTCGGCTACTTGGGGGACATCGACTTGGGTGTCTTCACAAGGGGAAGGACCCTCTGAACGGTTGTCAGTTGCTTGGGGGCCACCAACTTGGGGGTCTTTACAGGGAGAGAGACCCTATGAACTGTCGCCAGCTGCTTGGGGGGCACCAACTTGGTATGAACAACCGTCAACTGCTTGGAGGTCACCAACTTTGGTCTCTTCACAGGGAGAGGGGTCCTATGAACAACCGCCAGCTGCTTGGGGGGCACCAACTTGGTATGAACAACCGCCAGCTGCTTGGAGGTCACCAACTTGGTATGAACAGCCGTCAACTGCTTGGAGGTCACCAACTTTGGTCTCTTCACAGGGAGAGGGGTCCTATGAACAACCGCCAGCTGCTTGGGGGTCACCAACTTGGATCTCTTCACAGGGAGAGGGGCCCTATGAACAGTCACCAGCTGCTTGGGGATCACCAACTTGGTTGTCTTCACAAGGAGAGGGACCCTATGAACGGTCGTTAGCTGCTTGGGGGCAACCAAATTGGGCGTCTTCACATGGAGAGGGACCCTATGAACTGTCGTCAGCTGCTTGGGGGGCACCAACTAGGTATGAACCGACGTCAGCTGCTTGGGGATCACCAACTTGGGTGTCTTCCCAGGAAGAGGGGCCCTATGAACAACCGTCAGCTGCTTGGGGGACACCAACTTGGGTGTCTTCACCGGAAGAGGGACCCTCAGAACAACTCCAAGTTCCCACAGTTGACTTTGCTGAAAATGACGATGATGTCATTGAAACTTCGTCAAGAGACTTTGCTGAGGCTGTCGCAGATACGAGGAGAACTCGTAGAAGGATGGGACATGACTCAAATATGGAAAATCAAACCATGCCAACTTATAATTTTATGCACGAGAGAGGCAGCACCAGTGAAGTGATTGAAAATGAAACAGCTGAACCTCCTCCAAAAGAGGCTAGCATAAAATGTCCAATATGTATGAACCCTAGTGTGGAGGAAATGACAACAAGATGTGGCCATATTTTTTGCAAGAAATGCATCACAACTGCACTCACTGCATCTCGTAAATGCCCTACATGCGGAAAAGGGGCTTCTAAGAGGGGACTTGTCAGGGTGTTTCTTCCATCTACTAGAATAATTGATGAAGAATATCAATTATTGGATGCTTAG | 1254 | 0.5 | MNSHNLRSNRRRNETLPPWESSQREETFERPSATWGTSTWVSSQGEGPSERLSVAWGPPTWGSLQGERPYELSPAAWGAPTWYEQPSTAWRSPTLVSSQGEGSYEQPPAAWGAPTWYEQPPAAWRSPTWYEQPSTAWRSPTLVSSQGEGSYEQPPAAWGSPTWISSQGEGPYEQSPAAWGSPTWLSSQGEGPYERSLAAWGQPNWASSHGEGPYELSSAAWGAPTRYEPTSAAWGSPTWVSSQEEGPYEQPSAAWGTPTWVSSPEEGPSEQLQVPTVDFAENDDDVIETSSRDFAEAVADTRRTRRRMGHDSNMENQTMPTYNFMHERGSTSEVIENETAEPPPKEASIKCPICMNPSVEEMTTRCGHIFCKKCITTALTASRKCPTCGKGASKRGLVRVFLPSTRIIDEEYQLLDA | 417 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre2g01869 | 417 | MobiDBLite | consensus disorder prediction | 7 | 27 | - | - | |
Trre2g01869 | 417 | PANTHER | ELFLESS, ISOFORM B | 263 | 405 | - | - | |
Trre2g01869 | 417 | Pfam | Zinc finger, C3HC4 type (RING finger) | 350 | 388 | - | - | |
Trre2g01869 | 417 | ProSitePatterns | Zinc finger RING-type signature. | 366 | 375 | IPR017907 | - | |
Trre2g01869 | 417 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 325 | 415 | IPR013083 | - | |
Trre2g01869 | 417 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
Trre2g01869 | 417 | SUPERFAMILY | RING/U-box | 350 | 391 | - | - | |
Trre2g01869 | 417 | MobiDBLite | consensus disorder prediction | 236 | 271 | - | - | |
Trre2g01869 | 417 | SMART | ring_2 | 351 | 388 | IPR001841 | - | |
Trre2g01869 | 417 | MobiDBLite | consensus disorder prediction | 28 | 49 | - | - | |
Trre2g01869 | 417 | MobiDBLite | consensus disorder prediction | 255 | 270 | - | - | |
Trre2g01869 | 417 | ProSiteProfiles | Zinc finger RING-type profile. | 351 | 388 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre2g01869 | Trre-Chr2 | 15320803 | 15324342 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre2g01869 | 281 | 406 | C3H Transcription Factor Family | AT3G07200 | 37.879 | 1.07e-24 | 98.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre2g01869 | K22651 | - | tpra:123891564 | 257.684 |