Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01869 ATGAATTCTCATAATTTGAGGAGTAACAGACGAAGAAATGAAACTCTACCACCTTGGGAGTCTTCACAGAGAGAGGAAACCTTTGAACGGCCGTCGGCTACTTGGGGGACATCGACTTGGGTGTCTTCACAAGGGGAAGGACCCTCTGAACGGTTGTCAGTTGCTTGGGGGCCACCAACTTGGGGGTCTTTACAGGGAGAGAGACCCTATGAACTGTCGCCAGCTGCTTGGGGGGCACCAACTTGGTATGAACAACCGTCAACTGCTTGGAGGTCACCAACTTTGGTCTCTTCACAGGGAGAGGGGTCCTATGAACAACCGCCAGCTGCTTGGGGGGCACCAACTTGGTATGAACAACCGCCAGCTGCTTGGAGGTCACCAACTTGGTATGAACAGCCGTCAACTGCTTGGAGGTCACCAACTTTGGTCTCTTCACAGGGAGAGGGGTCCTATGAACAACCGCCAGCTGCTTGGGGGTCACCAACTTGGATCTCTTCACAGGGAGAGGGGCCCTATGAACAGTCACCAGCTGCTTGGGGATCACCAACTTGGTTGTCTTCACAAGGAGAGGGACCCTATGAACGGTCGTTAGCTGCTTGGGGGCAACCAAATTGGGCGTCTTCACATGGAGAGGGACCCTATGAACTGTCGTCAGCTGCTTGGGGGGCACCAACTAGGTATGAACCGACGTCAGCTGCTTGGGGATCACCAACTTGGGTGTCTTCCCAGGAAGAGGGGCCCTATGAACAACCGTCAGCTGCTTGGGGGACACCAACTTGGGTGTCTTCACCGGAAGAGGGACCCTCAGAACAACTCCAAGTTCCCACAGTTGACTTTGCTGAAAATGACGATGATGTCATTGAAACTTCGTCAAGAGACTTTGCTGAGGCTGTCGCAGATACGAGGAGAACTCGTAGAAGGATGGGACATGACTCAAATATGGAAAATCAAACCATGCCAACTTATAATTTTATGCACGAGAGAGGCAGCACCAGTGAAGTGATTGAAAATGAAACAGCTGAACCTCCTCCAAAAGAGGCTAGCATAAAATGTCCAATATGTATGAACCCTAGTGTGGAGGAAATGACAACAAGATGTGGCCATATTTTTTGCAAGAAATGCATCACAACTGCACTCACTGCATCTCGTAAATGCCCTACATGCGGAAAAGGGGCTTCTAAGAGGGGACTTGTCAGGGTGTTTCTTCCATCTACTAGAATAATTGATGAAGAATATCAATTATTGGATGCTTAG 1254 0.5 MNSHNLRSNRRRNETLPPWESSQREETFERPSATWGTSTWVSSQGEGPSERLSVAWGPPTWGSLQGERPYELSPAAWGAPTWYEQPSTAWRSPTLVSSQGEGSYEQPPAAWGAPTWYEQPPAAWRSPTWYEQPSTAWRSPTLVSSQGEGSYEQPPAAWGSPTWISSQGEGPYEQSPAAWGSPTWLSSQGEGPYERSLAAWGQPNWASSHGEGPYELSSAAWGAPTRYEPTSAAWGSPTWVSSQEEGPYEQPSAAWGTPTWVSSPEEGPSEQLQVPTVDFAENDDDVIETSSRDFAEAVADTRRTRRRMGHDSNMENQTMPTYNFMHERGSTSEVIENETAEPPPKEASIKCPICMNPSVEEMTTRCGHIFCKKCITTALTASRKCPTCGKGASKRGLVRVFLPSTRIIDEEYQLLDA 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01869 417 MobiDBLite consensus disorder prediction 7 27 - -
Trre2g01869 417 PANTHER ELFLESS, ISOFORM B 263 405 - -
Trre2g01869 417 Pfam Zinc finger, C3HC4 type (RING finger) 350 388 - -
Trre2g01869 417 ProSitePatterns Zinc finger RING-type signature. 366 375 IPR017907 -
Trre2g01869 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 325 415 IPR013083 -
Trre2g01869 417 MobiDBLite consensus disorder prediction 1 52 - -
Trre2g01869 417 SUPERFAMILY RING/U-box 350 391 - -
Trre2g01869 417 MobiDBLite consensus disorder prediction 236 271 - -
Trre2g01869 417 SMART ring_2 351 388 IPR001841 -
Trre2g01869 417 MobiDBLite consensus disorder prediction 28 49 - -
Trre2g01869 417 MobiDBLite consensus disorder prediction 255 270 - -
Trre2g01869 417 ProSiteProfiles Zinc finger RING-type profile. 351 388 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01869 Trre-Chr2 15320803 15324342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01869 281 406 C3H Transcription Factor Family AT3G07200 37.879 1.07e-24 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01869 K22651 - tpra:123891564 257.684