Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01868 ATGTACAATACATGCAATTACGAATCTACCCTTGATCACTCAGATGAAGATTTAGAATGTGCTGTGTGTCTCTGCAAAATAGAAGATGAAGATGAGATTAGAGTATTGAGGTGTAACCATATGTATCACAAACATTGTTTGGATAAATGGATTGGTTTCAAAAACCATACTTGTCCTCTTTGTAGAGAATCATTGAGACCAAAAAATGTTATCACTGAGCTTGGAGTTGAAGTTCTTTCATTTAATTTTTGTGCCATTCGTAGAGATCGATATTTGGCTCTGTTTTCATCACAAGTTGGGTTACCCTCTGCTGTCGATGATGCTGGTTCGAGGCGGTGGTTTGATGTTGTAGGTTTTGTAGAAGGGGTGTTGGATATTGTTTTTGCAGCGGTGGTTTTGTGGAGTGTTTTATGGAACTGGGTTGGTTAG 429 0.3846 MYNTCNYESTLDHSDEDLECAVCLCKIEDEDEIRVLRCNHMYHKHCLDKWIGFKNHTCPLCRESLRPKNVITELGVEVLSFNFCAIRRDRYLALFSSQVGLPSAVDDAGSRRWFDVVGFVEGVLDIVFAAVVLWSVLWNWVG 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01868 142 ProSiteProfiles Zinc finger RING-type profile. 20 62 IPR001841 -
Trre2g01868 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 75 IPR013083 -
Trre2g01868 142 SUPERFAMILY RING/U-box 14 68 - -
Trre2g01868 142 PANTHER RING ZINC FINGER PROTEIN-RELATED 13 74 - -
Trre2g01868 142 SMART ring_2 20 61 IPR001841 -
Trre2g01868 142 Pfam Ring finger domain 19 62 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01868 Trre-Chr2 15313622 15317870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01868 17 65 C3H Transcription Factor Family AT2G04240 55.102 5.62e-14 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01868 K16282 - mof:131153263 108.612