Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01853 ATGGAAATTCTAACTTTTGTTGTTGGAAAAGTAGTAGATTATACTGTTGCGCCTATTGGACGTCAAGCAAGTTACTTGATATTCTACAAAGGCAATTTTAAGATGTTAGCGGATCATGTCAAAGACCTCCAGGCTGCAAAAGAAAGATTGCTTCATTCGGTTGAAGAAGAAAGGGGAAATGGTAAAGAAATCGAAAGAGATGTGGTGAACTGGTTGGAGAAAGTGGACGAGCTGATTGAAACAGCAAATCAGCTTCAACAAGATCCTCGTCGTGCCAATGTCAGGTGCTCAACATGGGGGTTCCCCAATTTGATTTTGCGTCATCAACTAAGTAGGAAAGCCAAAAAAATTGCAAACGATGTTGTCCAAGTTCAAGGGAAAGGGACGTTTGATCGAGTTGGTTACCTTCCAACCGTAGATGGAGTAGCATCCTCATCCTCAACAAGAGGTAGTGAAATGTATGAGACAAGGGAGTCACTTAAGGAGGAAATTGTGAAGGCTTTATCAAACCCCAATTCACGCAACATTGGGATCTATGGTTTGGGTGGGGTGGGAAAGACCACTCTGGTGGAAGAAGTTATGCTAAAAGCAAAGCAACTTAAATTGTTTGATAAAGTGGTTATAACACATGTATCCCAAAACCCAGACTTTAAAACCATTCAAGGGGAGATTGCAGATTTGTTGGGTTTGCGTTTCGACGAGGAGACAATTTTTGGAAGAGCAAATCGCCTGAGACAAAGAATCAAGATGGAGAAAAGTATCCTTGTCATTCTAGACAATATATGGAGCATGCTTAATTTGAAGAAAGTGGGAATCCCAATTGGTAATGAACATAATGGTTGCAAATTATTGATGACAAGTAGAAATCAAGATGTGTTGCTGCAAATGGATGTTCCAATGGATTTCACTTTCAAACTTGAACTTATGAGTGAAAACGAGACATGGAAGTTGTTTCAATTTATGGCTGAAGATGTGGTTAAAGATAGAAATTTGAATGATGTAGCAATTCAAGTTGCCCAAAAATGTGAAGGTTTGCCTCTTAGGGTAGTGACGGTGGCACGTGCAATGAGAAATAAGAGAGACATCCAATCCTGGAAAGATGCATTAAGGAAATTACAATGTAATGATCATACAGAGATGGACGCGTTAACTTATTCTGCTTTGGAATTGAGTTACAACTCGTTGGAGAGTGATGAAATGAGGGATCTATTCTTGCTTTTTGCATTAATGGAAGGTTACCCTGTACAGTACTTTCTGATAGTTGCAATGGGTTTGAATATATTAAAGCATGTTAATACCATGGATGAGGAAAGAAACAAACTTTACACAATAATCAGATCTTTGGAGGTGACTTGTCTTTTGCTTAATGTTAAAACAGGTGGGAATATTTCAATGCATGATTTTGTTCGTGATTTTGCTACCTCCATAGCACGTAGGGACAAACATGTATTCCTAAGAAAACAATCTGATGAGGAATTGCCAACCAATGCTTTTTTAAATAGGTGCATGCAGATTTTTCTACAACAGTCTCATATCCACGAACTTCCTCAAACGATTGTTTGTCCAAACATTAAGTTGTTCTATTTGGGTAGTATGAACCTATCTTTAAAGATCCCTGATACTTTTTTTGAGGGGATGGCCAGCCTTAGAGTGCTAGATTTAACACATCTGCACTTGTCTTCATTACCCACCTCATTTCGGTTCCTAACCGACCTTAAAACGTTGTGTTTGAATTTATGCATTTTGGAAAATATGGATGCAATAGAAGGTCTGCAAAATTTACAAATTCTTTGCATCTGGAAATCATCTATGACCAAGTTCCCAAGAGAAGTAGGGAGATTGACTCAATTGAGAATGCTTGATTTGAGCAATTCAGGAATTGAAGACCTCCCATCCAACATCATATCAAGTTTAATTAATTTGGAGGAGTTGTACATGGGCAATACCTCTATTAATTGGGAAGATGTGAATTCAACGGTTCAAAATGGAAATGCTAGCATTGCCGAGCTTCAGAAACTACCCAAGTTGACTGCTCTAGAATTACAAATTCGAGAGACTTGGATGTTGCCAAGGGACATGCAATTGATGTTTGAGAAGCTGAATTCTTTTAAAATTGCTATTGGGGATGTATGGGAATGGGCAGACATTCAGGATGGAACCTTAAAAACATTGATGCTCAAACTTGGTACCAACATACATTTGGAGCACGGAATTAAAGCATTGATTAAAGGTGTTGAGAATTTGTACTTGGATGATGTTGATGGAATTCAAAATGTGCTTTATCAACTAAATGGGGAAGGATTTCGATTGCTGAAACATCTTCACGTCCAAAATAATGCAAACATGAAGCACATTGTTGACTCGAAAGAGAGAAATCAAATCCATGTGTCCTTTCCCATCTTGGAAACACTAGTACTTCACAATCTTAAAAACTTGGAGCATATATGTCATGGTCCACTTTCAATTACTTCTTTTGGAAGTCTTAGTGTTATCAAAGTCAAAAATTGTGTCCAATTAAAATATCTTTTCTCCTATACATTGGTTAAAGAACTTTCCCACCTTTCAGAAATTGAAGTCTTCCACTGCAGTTCTATGACGAAGATTGTGCTCAAAGACAACAATTCAAGTGCAAATAATGATATAGATAATGAAAAAATTGATTTTCTTCTATTGCGTTCTTTGACTTTAGAACATTTGGAGACAATTGATGATTTCTTCTCTTATCATTTGACGAATTCCAGAAGTAAGCAAAAATATCATGATTTAGAGCCTGATGTTTCTGCCCCATTTTTCAATGCTCAGGTTGCATTTCCTAAATTGGATACCCTCAAATTGTGCTCACTCCTCAATTTGAATAAAATTTGGGATGACAATTATGATTCAATGTACAACTTGACTAGCTTGATTGTGGATAATTGTGGCGGGTTGAAGTACTTATTCTCATCTACTGTGGTTGGAAGTTTTAAGAACCTCAAACACCTTGAAATAAGTAATTGTGCTATGATGGAGGAGATTATAGCTAAAGAAGATGCAAGAGGTGCATCAGAAGAGGTTCATTTTTGCAAATTAGAGAAAATCATATTGAAGGACATGGACAACTTGAAGACAATATGGCATCGCCAATTTGAAACATTGAAGAAGTTGCAAGTGAACAACTGTAATAAAATTGTGGTGGTTTTTCCCTCTTCAATGCAAAAAACACATAAGAAGCTAGAGATGTTGGAGGTTACAAATTCTGGTTTAGTGGAAGAAATATTTGAATTGAGCTTCAATGGAAGTAGCAGTGTAGAAGATACAACATGTAAGACCCAAGATTTCACTGTACAGTTTTCTAAGGAACTCTAG 3345 0.3716 MEILTFVVGKVVDYTVAPIGRQASYLIFYKGNFKMLADHVKDLQAAKERLLHSVEEERGNGKEIERDVVNWLEKVDELIETANQLQQDPRRANVRCSTWGFPNLILRHQLSRKAKKIANDVVQVQGKGTFDRVGYLPTVDGVASSSSTRGSEMYETRESLKEEIVKALSNPNSRNIGIYGLGGVGKTTLVEEVMLKAKQLKLFDKVVITHVSQNPDFKTIQGEIADLLGLRFDEETIFGRANRLRQRIKMEKSILVILDNIWSMLNLKKVGIPIGNEHNGCKLLMTSRNQDVLLQMDVPMDFTFKLELMSENETWKLFQFMAEDVVKDRNLNDVAIQVAQKCEGLPLRVVTVARAMRNKRDIQSWKDALRKLQCNDHTEMDALTYSALELSYNSLESDEMRDLFLLFALMEGYPVQYFLIVAMGLNILKHVNTMDEERNKLYTIIRSLEVTCLLLNVKTGGNISMHDFVRDFATSIARRDKHVFLRKQSDEELPTNAFLNRCMQIFLQQSHIHELPQTIVCPNIKLFYLGSMNLSLKIPDTFFEGMASLRVLDLTHLHLSSLPTSFRFLTDLKTLCLNLCILENMDAIEGLQNLQILCIWKSSMTKFPREVGRLTQLRMLDLSNSGIEDLPSNIISSLINLEELYMGNTSINWEDVNSTVQNGNASIAELQKLPKLTALELQIRETWMLPRDMQLMFEKLNSFKIAIGDVWEWADIQDGTLKTLMLKLGTNIHLEHGIKALIKGVENLYLDDVDGIQNVLYQLNGEGFRLLKHLHVQNNANMKHIVDSKERNQIHVSFPILETLVLHNLKNLEHICHGPLSITSFGSLSVIKVKNCVQLKYLFSYTLVKELSHLSEIEVFHCSSMTKIVLKDNNSSANNDIDNEKIDFLLLRSLTLEHLETIDDFFSYHLTNSRSKQKYHDLEPDVSAPFFNAQVAFPKLDTLKLCSLLNLNKIWDDNYDSMYNLTSLIVDNCGGLKYLFSSTVVGSFKNLKHLEISNCAMMEEIIAKEDARGASEEVHFCKLEKIILKDMDNLKTIWHRQFETLKKLQVNNCNKIVVVFPSSMQKTHKKLEMLEVTNSGLVEEIFELSFNGSSSVEDTTCKTQDFTVQFSKEL 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01853 1114 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 406 IPR027417 -
Trre2g01853 1114 SUPERFAMILY L domain-like 465 894 - -
Trre2g01853 1114 SUPERFAMILY L domain-like 937 1092 - -
Trre2g01853 1114 Coils Coil 68 88 - -
Trre2g01853 1114 PRINTS Disease resistance protein signature 986 1002 - -
Trre2g01853 1114 PRINTS Disease resistance protein signature 248 262 - -
Trre2g01853 1114 PRINTS Disease resistance protein signature 342 356 - -
Trre2g01853 1114 PRINTS Disease resistance protein signature 175 190 - -
Trre2g01853 1114 Gene3D - 142 301 IPR027417 -
Trre2g01853 1114 Gene3D Ribonuclease Inhibitor 931 1107 IPR032675 -
Trre2g01853 1114 Coils Coil 40 60 - -
Trre2g01853 1114 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 20 902 - -
Trre2g01853 1114 Pfam NB-ARC domain 158 393 IPR002182 GO:0043531
Trre2g01853 1114 Gene3D - 308 396 IPR042197 -
Trre2g01853 1114 SMART AAA_5 172 314 IPR003593 GO:0016887
Trre2g01853 1114 SMART LRR_typ_2 614 637 IPR003591 -
Trre2g01853 1114 SMART LRR_typ_2 546 568 IPR003591 -
Trre2g01853 1114 Gene3D Ribonuclease Inhibitor 500 911 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01853 Trre-Chr2 15177857 15181705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01853 174 569 WRKY Transcription Factor Family AT5G45050 24.292 6.18e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01853 - - mtr:25482804 1685.23