Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01850 ATGCTTGAGATAATGTTTTCTGGAGTTAAGCAAATTGTAGCAATGGAAGAAGGATCAATGGAACATAGCTTTCATTTTCCTCAATTGAATACATTCAAACTGGTTTGTTTGACAAAGCTTGCGAGCTTCTATGGTGGAAAGTATTCCTTAGATTGCCCTTCATTAAAGGTATTGGATGTATCTTATTGTGCCTTCAACCATTTGGACTGGTTTTCTATTGAAAAGTTGAGTCGTAACTTGGAGGAATTGATAGTAAATAGAACAGAGCTGTTGGAGATATTGAATCAAGAAAATATCTTTCAAAAAGTTCAAACGCTTTATTTGCAATGCTTGGATGAAACTCCTGCTACTTTTCTGAATGAATATTCTCACACAATATTTCCTAATCTTGAAACATTTCAAGTGCGTAATAGTTCTTTTGAAACATTGTTTCCCACTACTGGTTTTCTCAGTATGCAAATTTCAAAGCAAATAAAAACTTTGACACTTTTAAATGTGAAAATGCTCAAGTACATCTGGCAAGAAGACTTTCCATTGGACCATCCTTTGTTACAAGATCTTCATAAATTATCTGTAGGGGATTGTCCTAGTTTGATAAGCTTGGTACCATCGTCGACATCTTTCACAAATTTAACCATTTTGATTGTGGTCGATTGCAAAGAGTTGAATTATTTGATAACATCTTCAACAGCTAAAAGCTTAATTCAACTCAAAATGTTAAGTATAAGCAATTGTGAGAAGATGTTGGATGTTGTGAAGATTGATGATGAAAAAGCAGAGGAAGACATCATATTTCAAAACTTGGAATACATGGAATTCATTAATTTGTCAAGTTTGGGAAGCTTCTGTTATGGGAATCAAACATTCATGTTCCCATCTTTGCTACAGCTCATGATTGAAGGGTGCCCTCAAATGATGATCTTCTCATCACGAGTCACAGTAGCACCATATCTGACAGAAATTGAAGTGGGAAAAGGAACTACTAGATGGAAAGGTGACATTAACACAACTATTCAACATTTATTCCAAGAAAAGGAAGTCATTGAACCTGATGGTGATACTTTTGCTGATTGGCCTGTTGATCTTGATACCAAACCGGAGGAGCTTGAGTGGTGGATGAATGCTGTTGATTCTATCAAAAGTTTTGGGAATGAATATTATAAGAAGCAAGATTATAAGATGGCTATCAAAAAGTATAGCAAGGCTTTGCGCTATTTGGACATGTGTTCGGAGAAGGATGGCACTGCTTTAAGGAAGACAAAATCTCAAATCTTTACCAACAGGTCAGCCTGTAAATTGAAACTAGGTGACCTGGATGGAGCTTTAAAGGATGCAAACTCTGCAATGCATGATGGAGATAATGCAAAAGCTCTGTTTCGCAAAGGCCAGGTGTATATGTTACAAAATGAACTAGATGCCGCTCTTGAAAGCTTCAAGAAAGCATTAGAATTGGAGCCAAATGATGGAGGGATCAAAAGACAGTATGCAATTGCCAGGAAGAAGGAAGTCCTCCGTTCTAATGCACTGAATGAGACCATCATATCTTCACATTTGCAAGATGATGAGCTAGGAGGTCAAGATGGTATTGACGCAAACCCTGAGGGACCACCATGTCATATAGTTTTCCATAATTAG 1635 0.3682 MLEIMFSGVKQIVAMEEGSMEHSFHFPQLNTFKLVCLTKLASFYGGKYSLDCPSLKVLDVSYCAFNHLDWFSIEKLSRNLEELIVNRTELLEILNQENIFQKVQTLYLQCLDETPATFLNEYSHTIFPNLETFQVRNSSFETLFPTTGFLSMQISKQIKTLTLLNVKMLKYIWQEDFPLDHPLLQDLHKLSVGDCPSLISLVPSSTSFTNLTILIVVDCKELNYLITSSTAKSLIQLKMLSISNCEKMLDVVKIDDEKAEEDIIFQNLEYMEFINLSSLGSFCYGNQTFMFPSLLQLMIEGCPQMMIFSSRVTVAPYLTEIEVGKGTTRWKGDINTTIQHLFQEKEVIEPDGDTFADWPVDLDTKPEELEWWMNAVDSIKSFGNEYYKKQDYKMAIKKYSKALRYLDMCSEKDGTALRKTKSQIFTNRSACKLKLGDLDGALKDANSAMHDGDNAKALFRKGQVYMLQNELDAALESFKKALELEPNDGGIKRQYAIARKKEVLRSNALNETIISSHLQDDELGGQDGIDANPEGPPCHIVFHN 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01850 544 Coils Coil 73 93 - -
Trre2g01850 544 Gene3D Tetratricopeptide repeat domain 367 509 IPR011990 GO:0005515
Trre2g01850 544 ProSiteProfiles TPR repeat region circular profile. 455 488 - -
Trre2g01850 544 ProSiteProfiles TPR repeat profile. 455 488 IPR019734 GO:0005515
Trre2g01850 544 SUPERFAMILY TPR-like 370 500 IPR011990 GO:0005515
Trre2g01850 544 Gene3D Ribonuclease Inhibitor 37 260 IPR032675 -
Trre2g01850 544 FunFam peptidyl-prolyl cis-trans isomerase D 374 513 - -
Trre2g01850 544 PANTHER PEPTIDYLPROLYL ISOMERASE 368 502 - -
Trre2g01850 544 Pfam Tetratricopeptide repeat 455 488 IPR001440 GO:0005515
Trre2g01850 544 SUPERFAMILY L domain-like 25 322 - -
Trre2g01850 544 SMART tpr_5 422 454 IPR019734 GO:0005515
Trre2g01850 544 SMART tpr_5 376 409 IPR019734 GO:0005515
Trre2g01850 544 SMART tpr_5 455 488 IPR019734 GO:0005515
Trre2g01850 544 MobiDBLite consensus disorder prediction 520 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01850 Trre-Chr2 15143712 15147267 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01850 343 492 Calmodulin-binding Proteins AT3G25230 34.783 8.66e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01850 K05864 - tpra:123902283 498.049