Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01849 ATGCAAGTGTTATATGGATTGGAAGAACTAGAAGTAAAAGATTGTGATTCATTAGAAGCAGTGTTTGATGTGAAAGACATGAAGTCTAAAGACACATTGATAAATCAAAGCACTCAATTGAAAAAATTGACTTTGTCCAATTTACCAAAATTGAAGCACATATGGAATGAGAATCCACATGATATTATAAACTTTGGAAACTTATGCACGGTGAATGTTTCAATGTGTCAAAGTTTGTTATATATATTTCGATTGTCACTATGTGAAGATCTTAAACATCTTGAAATGCTTGAGATAATGTTTTCTGGAGTTAAGCAAATTGTAGCAATGGAAGAAGGATCAATGGAACATAGCTTTCATTTTCCTCAATTGAATACATTCAAACTGGTTTGTTTGACAAAGCTTGCGAGCTTCTATGGTGGAAAGTATTCCTTAGATTGCCCTTCATTAAAGGTATTGGATGTATCTTATTGTGCCTTCAACCATTTGGACTGGTTTTCTATTGAAAAGTTGAGTCGTAACTTGGAGGAATTGATAGTAAATAGAACAGAGCTGTTGGAGATATTGAATCAAGAAAATATCTTTCAAAAAGTTCAAACGCTTTATTTGCAATGCTTGGATGAAACTCCTGCTACTTTTCTGAATGAATATTCTCACACAATATTTCCTAATCTTGAAACATTTCAAGTGCGTAATAGTTCTTTTGAAACATTGTTTCCCACTACTGGTTTTCTCAGTATGCAAATTTCAAAGCAAATAAAAACTTTGACACTTTTAAATGTGAAAATGCTCAAGTACATCTGGCAAGAAGACTTTCCATTGGACCATCCTTTGTTACAAGATCTTCATAAATTATCTGTAGGGGATTGTCCTAGTTTGATAAGCTTGGTACCATCGTCGACATCTTTCACAAATTTAACCATTTTGATTGTGGTCGATTGCAAAGAGTTGAATTATTTGATAACATCTTCAACAGCTAAAAGCTTAATTCAACTCAAAATGTTAAGTATAAGCAATTGTGAGAAGATGTTGGATGTTGTGAAGATTGATGATGAAAAAGCAGAGGAAGACATCATATTTCAAAACTTGGAATACATGGAATTCATTAATTTGTCAAGTTTGGGAAGCTTCTGTTATGGGAATCAAACATTCATGTTCCCATCTTTGCTACAGCTCATGATTGAAGGGTGCCCTCAAATGATGATCTTCTCATCACGAGTCACAGTAGCACCATATCTGACAGAAATTGAAGTGGGAAAAGGAACTACTAGATGGAAAGGTGACATTAACACAACTATTCAACATTTATTCCAAGAAAAGGAAGTCATTGAACCTGATGGTGATACTTTTGCTGATTGGCCTGTTGATCTTGATACCAAACCGGAGGAGCTTGAGTGGTGGATGAATGCTGTTGATTCTATCAAAAGTTTTGGGAATGAATATTATAAGAAGCAAGATTATAAGATGGCTATCAAAAAGTATAGCAAGGCTTTGCGCTATTTGGACATGTGTTCGGAGAAGGATGGCACTGCTTTAAGGAAGACAAAATCTCAAATCTTTACCAACAGGTCAGCCTGTAAATTGAAACTAGGTGACCTGGATGGAGCTTTAAAGGATGCAAACTCTGCAATGCATGATGGAGATAATGCAAAAGCTCTGTTTCGCAAAGGCCAGGTGTATATGTTACAAAATGAACTAGATGCCGCTCTTGAAAGCTTCAAGAAAGCATTAGAATTGGAGCCAAATGATGGAGGGATCAAAAGACAGTATGCAATTGCCAGGAAGAAGGAAGTCCTCCGTTCTAATGCACTGAATGAGACCATCATATCTTCACATTTGCAAGATGATGAGCTAGGAGGTCAAGATGGTATTGACGCAAACCCTGAGGGACCACCATGTCATATAGTTTTCCATAATTAG 1920 0.3589 MQVLYGLEELEVKDCDSLEAVFDVKDMKSKDTLINQSTQLKKLTLSNLPKLKHIWNENPHDIINFGNLCTVNVSMCQSLLYIFRLSLCEDLKHLEMLEIMFSGVKQIVAMEEGSMEHSFHFPQLNTFKLVCLTKLASFYGGKYSLDCPSLKVLDVSYCAFNHLDWFSIEKLSRNLEELIVNRTELLEILNQENIFQKVQTLYLQCLDETPATFLNEYSHTIFPNLETFQVRNSSFETLFPTTGFLSMQISKQIKTLTLLNVKMLKYIWQEDFPLDHPLLQDLHKLSVGDCPSLISLVPSSTSFTNLTILIVVDCKELNYLITSSTAKSLIQLKMLSISNCEKMLDVVKIDDEKAEEDIIFQNLEYMEFINLSSLGSFCYGNQTFMFPSLLQLMIEGCPQMMIFSSRVTVAPYLTEIEVGKGTTRWKGDINTTIQHLFQEKEVIEPDGDTFADWPVDLDTKPEELEWWMNAVDSIKSFGNEYYKKQDYKMAIKKYSKALRYLDMCSEKDGTALRKTKSQIFTNRSACKLKLGDLDGALKDANSAMHDGDNAKALFRKGQVYMLQNELDAALESFKKALELEPNDGGIKRQYAIARKKEVLRSNALNETIISSHLQDDELGGQDGIDANPEGPPCHIVFHN 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01849 639 FunFam peptidyl-prolyl cis-trans isomerase D 469 608 - -
Trre2g01849 639 Pfam Tetratricopeptide repeat 550 583 IPR001440 GO:0005515
Trre2g01849 639 SUPERFAMILY L domain-like 45 417 - -
Trre2g01849 639 SMART tpr_5 550 583 IPR019734 GO:0005515
Trre2g01849 639 SMART tpr_5 471 504 IPR019734 GO:0005515
Trre2g01849 639 SMART tpr_5 517 549 IPR019734 GO:0005515
Trre2g01849 639 Gene3D Tetratricopeptide repeat domain 462 604 IPR011990 GO:0005515
Trre2g01849 639 ProSiteProfiles TPR repeat profile. 550 583 IPR019734 GO:0005515
Trre2g01849 639 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 184 428 - -
Trre2g01849 639 ProSiteProfiles TPR repeat region circular profile. 550 583 - -
Trre2g01849 639 MobiDBLite consensus disorder prediction 615 639 - -
Trre2g01849 639 Coils Coil 168 188 - -
Trre2g01849 639 SUPERFAMILY TPR-like 465 595 IPR011990 GO:0005515
Trre2g01849 639 Gene3D Ribonuclease Inhibitor 212 436 IPR032675 -
Trre2g01849 639 Gene3D Ribonuclease Inhibitor 2 207 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01849 Trre-Chr2 15143427 15147267 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01849 438 587 Calmodulin-binding Proteins AT3G25230 34.783 1.77e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01849 - - tpra:123902283 657.907