Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01835 ATGTCTATGTTGGATCTTAATGTTGACATCATCAATGTTGATGATTACTCAACTAATGTTCAAAAGGGGTTGCAACTTCAATCTTTTCCACCTGAAATATCAGATTCTAGAACCTCAAACTCTTCTGTTTCAAATCCAGCAGAGGAATATTCCTCAAATAATTCATCTCCTTTCATTTTTGACCTGTTGAAGAAAGAAAAAGATGTCTCAGAAAGAGTCAAGGAAGAAAAAAAAGCACAAGCAATCACAAGGACCCTTTTCCCTGTGAGTGCTGATGGAGGAGGTAGATTATGTGATTCCAATACTCAAAAGGTGAACTTTGATGATCAAAATGGACACAGAATCTTGCAGCAAAAGCAACCTCAAGTTAGGAAAAGTAGGAGAGGACCAAGGTCTCGAAGCTCGCAGTATCGGGGTGTTACCTTCTACCGTAGAACTGGCAGATGGGAGTCACATATATGGGATTGTGGGAAGCAGGTCTATTTGGGTGGATTTGACACTTCTCATGCTGCTGCAAGAGCATATGATAGGGCTGCTATTATGTTTAGGGGAGTTGATGCTGATATAAACTTCATTTTGAGTGATTATGAAGAGGATTTGAAGCAGATGAGAGGTTTGAGTAAGGAAGAATTTGTCCAAAGACTTCGTAGACAAACCAATGGAAACTCAAGGAGAAGTTCAACATACAGAAGTGCATTACCTCTTCACAAATATGGTCAAGAAGATCCACCATTTGTGGCCAAAACATTTTGTCATAAATTACACATGAAGTGTGATCATGAAGTGGAAACCAATTTTAAGGCCTCTAATGCTTATAAGGGAGAGATAATTGCAAATTCCAACAAATTACATAATCTTGATTTGAGTCTAAGGATGTCAGCATCTTCCAAACAATTGAATAACAATAATTTTGGAGTTGGATTTTCTTCTGGATGTACAACTTATATGATACCTCAAGAAAGGGGAACAATGCAGGAGAAGGCATTGTTAAACATTAAAAAGGAAGTTCCATTGCAACAAGTATTGGCGTGGCAATTTTGCAGCAATGGGAGAAGCATTGCATTGGGGTCGTTGCAATCAAATGCAGCAGCATCATCAGGATTCGTTTCATCTCCCACACTTCCTCCAATCAACTCACATACAATTTTATCACTGACTCAACCACAATATTATAGATGA 1179 0.3842 MSMLDLNVDIINVDDYSTNVQKGLQLQSFPPEISDSRTSNSSVSNPAEEYSSNNSSPFIFDLLKKEKDVSERVKEEKKAQAITRTLFPVSADGGGRLCDSNTQKVNFDDQNGHRILQQKQPQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTSHAAARAYDRAAIMFRGVDADINFILSDYEEDLKQMRGLSKEEFVQRLRRQTNGNSRRSSTYRSALPLHKYGQEDPPFVAKTFCHKLHMKCDHEVETNFKASNAYKGEIIANSNKLHNLDLSLRMSASSKQLNNNNFGVGFSSGCTTYMIPQERGTMQEKALLNIKKEVPLQQVLAWQFCSNGRSIALGSLQSNAAASSGFVSSPTLPPINSHTILSLTQPQYYR 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01835 392 MobiDBLite consensus disorder prediction 118 137 - -
Trre2g01835 392 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 82 240 - -
Trre2g01835 392 SUPERFAMILY DNA-binding domain 135 192 IPR016177 GO:0003677
Trre2g01835 392 SMART rav1_2 136 198 IPR001471 GO:0003700|GO:0006355
Trre2g01835 392 MobiDBLite consensus disorder prediction 29 53 - -
Trre2g01835 392 Pfam AP2 domain 136 184 IPR001471 GO:0003700|GO:0006355
Trre2g01835 392 Gene3D AP2/ERF domain 135 193 IPR036955 GO:0003700|GO:0006355
Trre2g01835 392 FunFam AP2-like ethylene-responsive transcription factor 135 194 - -
Trre2g01835 392 CDD AP2 136 191 IPR001471 GO:0003700|GO:0006355
Trre2g01835 392 ProSiteProfiles AP2/ERF domain profile. 136 192 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01835 Trre-Chr2 15035299 15038351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01835 3 391 AP2-EREBP Transcription Factor Family AT5G60120 37.317 7.67e-59 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre2g01835 AP2 4.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01835 K09284 - gmx:100783626 405.601