Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01826 ATGTGGTCAAAATCTTTTGGAAGAAAGCGTGAAGAAGAAAGGTTCTATACTTTACCACACATTTATCCGGACTTTTCATCTTCTTCTGACAAGAAATGTGGAGAAACTTGTATTCTCAAACGTAAAAGGGTGCAAAAAGCATTAGAAACTTTTAGGAACTTATCTCACAATTTTTATTGTGATTACAAGTCAAATCAACTAGATCAACTATATAACTTCAAAGCAAAAATAAAAGCTTTAACAGATGCTGCAAATGCTATGAAAGAGAAAGATGAATGGGAAAACACTAGAAAGAGAATAGGGCATGTTGATGGAATTAATGTTGGTGACTTGTTTCAATATAGGGCTGAACTTGTTGTCATTGGTCTTCATCAACAATTCCAAAATGGTATTGATTATTTGGATAAAGGTGAAAACTCTTTGGCTACTAGCATTGTTGTAACTCCTAAGTATTCTAATGTTATGAAGTCTAGTGGTTGTTTGATTTATGAAGGTCAAGGTAGTAACCCTAGAGTGCGGAAACCTGTCGCGCCTCATGATCAGAAATTGGAAAAAGGAAATCTTGCTTTGCGGAATAGTATGAATGCTAAGCGCCCTGTTAGGGTTATATTGAAGATTTTCGGGAAATTTGATTGTATGGAAGAGTGGAGGAACAATGTTTCTAATTGTTCATTTAAATACGATGGGTTGTATTCGGTCGACACTATGACTCAAGAAAGGGGAGAATTTGGAAAACTTGTGTTCAAGTTTAAACTTAACAAACTTTCGGACCAACCCGCCCGTGTTTCCCTTTCCCCTCGAGATGTTGTTATGGAAACGGAAACTTTCCAAAAGAGATTTAAGTCTAGAAATCATGCTGTCCCCAAGGATATTGTTCTAATCATTGATATTTCGGAGGGGAAAGAAAAGTTTCCTATTCGGGTGGTGAAACCGAAAAGTTGTGAGGAGATAGTTAAACCTTTTGATTACCTAGTCAGAATGGCATATCCAAAGATGAATCATAAACTACTAGGTGGTGGATGTAATTGTGCAAATGCATTTGGTGGTTGTCTTAATTGTGTTTGTAATTGTGTTTGCATAGCTAAGAATGGCGGGGCAATAGCATATGATGGTAACAAAAGACTTGTTTCTCCTTTGAAATCATCCTTTATATATGAGTGCGGCCCTTCTTGCGCGTGTTCATCATCTTGCATCAATCGAGTGAGTCAATGTGGTATTCAGTTCCAACTGGAAATCTTCAGAACAAAATCAAAGGGATGGGGTGTTCGAACGCGATCTTTCATTCCATCTGGAAGCTTTGTGTGCGAGCTCGTTGGAGAATTTGTTCATCACAACAATAAAAACGCAGGATCAAATCTACATGCTGCTAACTATATATTTAATTTAGGTTTTGGCAAAGGCTTCATTGATGCAACTAGATATGGAAACATTGGAAGATTTATAAATCATAGTTGTTCTCCTAACTTATGTATGAAAGATGTTATATATGATCACAATGATAAGAGTGTACCCCACAAAATGTTGTTTGCTGTGAAGGACATACCCGCAGGTAGAGAGCTATGTTATGATTACAACTGCTTCAAGAGAAATTTCAAGGTTGAGAGTAATAATTGCTACTGTTGGTCATCAGAATGCCATGGACAAATTTACATTTGA 1656 0.3678 MWSKSFGRKREEERFYTLPHIYPDFSSSSDKKCGETCILKRKRVQKALETFRNLSHNFYCDYKSNQLDQLYNFKAKIKALTDAANAMKEKDEWENTRKRIGHVDGINVGDLFQYRAELVVIGLHQQFQNGIDYLDKGENSLATSIVVTPKYSNVMKSSGCLIYEGQGSNPRVRKPVAPHDQKLEKGNLALRNSMNAKRPVRVILKIFGKFDCMEEWRNNVSNCSFKYDGLYSVDTMTQERGEFGKLVFKFKLNKLSDQPARVSLSPRDVVMETETFQKRFKSRNHAVPKDIVLIIDISEGKEKFPIRVVKPKSCEEIVKPFDYLVRMAYPKMNHKLLGGGCNCANAFGGCLNCVCNCVCIAKNGGAIAYDGNKRLVSPLKSSFIYECGPSCACSSSCINRVSQCGIQFQLEIFRTKSKGWGVRTRSFIPSGSFVCELVGEFVHHNNKNAGSNLHAANYIFNLGFGKGFIDATRYGNIGRFINHSCSPNLCMKDVIYDHNDKSVPHKMLFAVKDIPAGRELCYDYNCFKRNFKVESNNCYCWSSECHGQIYI 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01826 551 ProSiteProfiles YDG domain profile. 101 254 IPR003105 -
Trre2g01826 551 SUPERFAMILY SET domain 281 540 IPR046341 -
Trre2g01826 551 SUPERFAMILY PUA domain-like 83 263 IPR015947 -
Trre2g01826 551 Pfam Pre-SET motif 297 400 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre2g01826 551 Gene3D - 82 272 IPR036987 -
Trre2g01826 551 SMART preset_2 294 392 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre2g01826 551 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 39 544 - -
Trre2g01826 551 Pfam SAD/SRA domain 100 258 IPR003105 -
Trre2g01826 551 ProSiteProfiles Pre-SET domain profile. 339 405 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre2g01826 551 Gene3D SET domain 273 535 IPR046341 -
Trre2g01826 551 Pfam SET domain 419 525 IPR001214 GO:0005515
Trre2g01826 551 SMART set_7 408 531 IPR001214 GO:0005515
Trre2g01826 551 SMART G9a_1 96 258 IPR003105 -
Trre2g01826 551 ProSiteProfiles SET domain profile. 408 525 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01826 Trre-Chr2 14932600 14934348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01826 79 547 Su(var)3-9 homologs AT1G73100 32.485 2.03e-73 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre2g01826 SAD_SRA 1.3e-38 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01826 - - gmx:100807574 558.91