Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01817 ATGTTGGCCATATCCCCTCCTTTGTTCTCAACAATTGGATGGCCTTTTGAAGAGACCATAAGCCATAATCTGCATCAGAATCACTTCTACAAAGACATTACTACTGATCAATTATTTGATATTAATAATCAAGTTGAGGCGGATAATTCAACTGATCCATCACAAGCCACAAGCTGTGATCTTAGTATGGTCAAGAAGCTTGTCCATAATGCTAGTGAACGCGATCGACGCAAGAAGATCAATAATTTGTATTCTTCAATTCGTTCGCTTCTTCCCGTTTCAGATCAAATGAAGAAGTTGAGCATTCCGGCAACAATTTCGCGAGTCCTAAAATACATACCGGAATTGCAGAAACAGGTGGAAGGACTAATTAAGAGAAAGGAAGAGATGTTATTGAGATTTTCGCCGCAAGTAGATGAGGTTATGATAAGCAAAGAATCTCAAAGGAAGAAACAAAGTTACAATTCTGGTTTTGTAGTTTCAACAACTAGACTTAATGATAGTGAAATTACTATTCAGATTTCATGTTACACTGTCAACAAGATTCCATTATCAGAGATCTTACTCTGTTTAGAAAATGATGGCCTTTTGCTGCTGAATGTTTCTTCTTCTCAAACATTTGGAGGGAGGGACTTCTATAATTTGCATTTACAGGTGGATAAATCTCAGAGATTAGAATCCGATATTCTAAATGAGAAGCTCTTATCAATAATGGAGAGAAAATGTGAATTTCCAAGTCAATAA 744 0.3629 MLAISPPLFSTIGWPFEETISHNLHQNHFYKDITTDQLFDINNQVEADNSTDPSQATSCDLSMVKKLVHNASERDRRKKINNLYSSIRSLLPVSDQMKKLSIPATISRVLKYIPELQKQVEGLIKRKEEMLLRFSPQVDEVMISKESQRKKQSYNSGFVVSTTRLNDSEITIQISCYTVNKIPLSEILLCLENDGLLLLNVSSSQTFGGRDFYNLHLQVDKSQRLESDILNEKLLSIMERKCEFPSQ 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01817 247 CDD bHLH_AtORG2_like 65 140 - -
Trre2g01817 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 116 IPR011598 GO:0046983
Trre2g01817 247 Coils Coil 113 133 - -
Trre2g01817 247 SMART finulus 70 122 IPR011598 GO:0046983
Trre2g01817 247 FunFam Transcription factor ORG2 60 145 - -
Trre2g01817 247 Pfam Helix-loop-helix DNA-binding domain 65 117 IPR011598 GO:0046983
Trre2g01817 247 Gene3D - 60 153 IPR036638 GO:0046983
Trre2g01817 247 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 55 236 - -
Trre2g01817 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 133 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01817 Trre-Chr2 14860099 14862145 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01817 1 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 43.083 8.61e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre2g01817 HLH 3.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01817 - - vvi:100262373 253.062