Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre2g01815 ATGTTGGCCATATCCCCTCCTTTGTTCTCAACAATTGGATGGCCTTTTGAAGAGACCATAAGCCATAATCTGCATCAGAATCACTTCTACAAAGACATTACTACTGATCAATTATTTGATATTAAAATTCAAGTTGAGGCTGAAAATTCAACTGATCCATCACAAGCCACAAGCTGTGATCTTAGTATGGTCAAGAAGCTAGTTCATAATGCTAGTGAACGTGATCGTCGCAAGAAGATCAATAATTTGTATTCTTCAATTCGTTCGCTTCTTCCCGTTTCAGATCAAATGAAGAAGTTGAGCATTCCGGCAACAATTTCGCGAGTCCTAAAATACATACCGGAGTTACAGAAACAGGTGGAAGGACTAATTAAGAGAAAGGAAGAGATGTTATTGAGATTATCCCCGCAAATCTATGAGGTTATGATAAGCAAAAAATCTCAAAGGAAGAAACAAAGTTACAACTCTGGTTTTGTAGTTTCAACAAGTAGACTTAATGATAGTGAAATTACTATTCAGATTTCATGTTACACTGTCCACAAGATTCCATTATCAGAGATCTTACTCTGTTTAGAAAATGATGGCCATTTGCTGCTGAATGTTTCTTCTTCTCAGACATTTGGAGGGAGGGACTTCTATAATTTGCATTTACAGGTGGATAAATCTCAGAGATTAGAATCCGATATTCTAAACGAGAAGCTCTTATCAAAAATGGAGAAAATGTGA 726 0.3636 MLAISPPLFSTIGWPFEETISHNLHQNHFYKDITTDQLFDIKIQVEAENSTDPSQATSCDLSMVKKLVHNASERDRRKKINNLYSSIRSLLPVSDQMKKLSIPATISRVLKYIPELQKQVEGLIKRKEEMLLRLSPQIYEVMISKKSQRKKQSYNSGFVVSTSRLNDSEITIQISCYTVHKIPLSEILLCLENDGHLLLNVSSSQTFGGRDFYNLHLQVDKSQRLESDILNEKLLSKMEKM 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre2g01815 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 116 IPR011598 GO:0046983
Trre2g01815 241 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 55 234 - -
Trre2g01815 241 CDD bHLH_AtORG2_like 65 135 - -
Trre2g01815 241 FunFam Transcription factor ORG2 60 152 - -
Trre2g01815 241 Coils Coil 113 133 - -
Trre2g01815 241 SMART finulus 70 122 IPR011598 GO:0046983
Trre2g01815 241 Gene3D - 60 153 IPR036638 GO:0046983
Trre2g01815 241 Pfam Helix-loop-helix DNA-binding domain 65 117 IPR011598 GO:0046983
Trre2g01815 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 135 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre2g01815 Trre-Chr2 14848739 14850920 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre2g01815 1 240 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 42.400 2.43e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre2g01815 HLH 3.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre2g01815 - - gmx:100803424 261.151